Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0139600 Rhododendron simsii HOM05D006386 ORTHO05D007575 3.6e-44 181.0 81 100.0
RcHm_v2.0_Chr7g0184161 Rosa chinensis HOM05D006386 ORTHO05D007575 2.1e-12 75.5 48 72.9
vmacro17651 Vaccinium macrocarpon HOM05D006386 ORTHO05D007575 8.1e-12 73.6 41 75.6
Solyc03g114520.3 Solanum lycopersicum HOM05D006386 ORTHO05D007575 1.1e-11 73.2 41 75.6
Sopen03g033610 Solanum pennellii HOM05D006386 ORTHO05D007575 1.1e-11 73.2 41 75.6
PGSC0003DMG400024511 Solanum tuberosum HOM05D006386 ORTHO05D007575 1.1e-11 73.2 41 75.6
MELO3C028557.2 Cucumis melo HOM05D006386 ORTHO05D007575 4.0e-11 71.2 86 44.2
FAN08G0928 Fragaria x ananassa HOM05D006386 ORTHO05D007575 5.2e-11 70.9 48 66.7
Lj9A435T83 Lonicera japonica HOM05D006386 ORTHO05D007575 2.6e-10 68.6 48 62.5
FvH4_5g13000 Fragaria vesca HOM05D006386 ORTHO05D007575 3.4e-10 68.2 48 62.5
FAN18G3466 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.4e-10 68.2 48 62.5
Nn3g17620 Nelumbo nucifera HOM05D006386 ORTHO05D007575 3.4e-10 68.2 45 68.9
FAN13G1489 Fragaria x ananassa HOM05D006386 ORTHO05D007575 4.4e-10 67.8 48 62.5
TWI81G0025 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 5.8e-10 67.4 41 70.7
AT5G35520 Arabidopsis thaliana HOM05D006386 ORTHO05D007575 9.9e-10 66.6 39 74.4
ClCG06G015230 Citrullus lanatus HOM05D006386 ORTHO05D007575 9.9e-10 66.6 39 74.4
Cc04_g07860 Coffea canephora HOM05D006386 ORTHO05D007575 9.9e-10 66.6 51 58.8
Thhalv10003465m.g Eutrema salsugineum HOM05D006386 ORTHO05D007575 9.9e-10 66.6 42 71.4
Nitab4.5_0000646g0180 Nicotiana tabacum HOM05D006386 ORTHO05D007575 1.7e-09 65.9 41 65.9
CARHR217490 Cardamine hirsuta HOM05D006386 ORTHO05D007575 2.2e-09 65.5 39 71.8
Dinv36853 Davidia involucrata HOM05D006386 ORTHO05D007575 2.2e-09 65.5 41 63.4
Prupe.5G212600 Prunus persica HOM05D006386 ORTHO05D007575 2.2e-09 65.5 48 62.5
Cpa.g.sc53.23 Carica papaya HOM05D006386 ORTHO05D007575 2.9e-09 65.1 41 65.9
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 3.7e-09 64.7 44 63.6
AL7G44320 Arabidopsis lyrata HOM05D006386 ORTHO05D007575 4.9e-09 64.3 39 71.8
CANSAT80G2620 Cannabis sativa HOM05D006386 ORTHO05D007575 4.9e-09 64.3 41 65.9
CsaV3_1G003130 Cucumis sativus L. HOM05D006386 ORTHO05D007575 4.9e-09 64.3 39 71.8
Potri.015G055500 Populus trichocarpa HOM05D006386 ORTHO05D007575 4.9e-09 64.3 41 65.9
Sed0015508 Sechium edule HOM05D006386 ORTHO05D007575 4.9e-09 64.3 39 74.4
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 6.4e-09 63.9 41 63.4
arahy.Tifrunner.gnm1.ann1.HL5ANR Arachis hypogaea HOM05D006386 ORTHO05D007575 6.4e-09 63.9 41 63.4
arahy.Tifrunner.gnm1.ann1.X9R15Y Arachis hypogaea HOM05D006386 ORTHO05D007575 6.4e-09 63.9 41 63.4
COL.COLO4_08656 Corchorus olitorius HOM05D006386 ORTHO05D007575 6.4e-09 63.9 41 65.9
Aa31LG4G9830 Aethionema arabicum HOM05D006386 ORTHO05D007575 8.3e-09 63.5 39 69.2
Hma1.2p1_0340F.1_g130200 Hydrangea macrophylla HOM05D006386 ORTHO05D007575 8.3e-09 63.5 44 61.4
Nitab4.5_0005402g0030 Nicotiana tabacum HOM05D002295 ORTHO05D007575 8.3e-09 63.5 41 63.4
Thecc.03G113300 Theobroma cacao HOM05D006386 ORTHO05D007575 8.3e-09 63.5 41 65.9
Gohir.D11G038000 Gossypium hirsutum HOM05D006386 ORTHO05D007575 1.1e-08 63.2 41 65.9
Gorai.007G040700 Gossypium raimondii HOM05D006386 ORTHO05D007575 1.1e-08 63.2 41 65.9
MD14G1218500 Malus domestica HOM05D006386 ORTHO05D007575 1.1e-08 63.2 48 58.3
arahy.Tifrunner.gnm1.ann1.7DA3AY Arachis hypogaea HOM05D006386 ORTHO05D007575 1.4e-08 62.8 41 61.0
HanXRQChr16g0502011 Helianthus annuus HOM05D006386 ORTHO05D007575 1.9e-08 62.4 48 58.3
GSVIVG01008195001 Vitis vinifera HOM05D006386 ORTHO05D007575 1.9e-08 62.4 41 63.4
THA.LOC104819388 Tarenaya hassleriana HOM05D006386 ORTHO05D007575 2.4e-08 62.0 41 63.4
Atru.chr9.671 Acer truncatum HOM05D006386 ORTHO05D007575 3.2e-08 61.6 41 63.4
Actinidia27067 Actinidia chinensis HOM05D006386 ORTHO05D007575 3.2e-08 61.6 41 61.0
Actinidia33576 Actinidia chinensis HOM05D006386 ORTHO05D007575 3.2e-08 61.6 41 61.0
Actinidia36923 Actinidia chinensis HOM05D006386 ORTHO05D007575 3.2e-08 61.6 41 61.0
Ciclev10021913m.g Citrus clementina HOM05D006386 ORTHO05D007575 3.2e-08 61.6 41 65.9
A04p09730 Brassica napus HOM05D006386 ORTHO05D007575 4.1e-08 61.2 39 66.7
BraA04t16635Z Brassica rapa HOM05D006386 ORTHO05D007575 4.1e-08 61.2 39 66.7
Duzib068G0691 Durio zibethinus HOM05D006386 ORTHO05D007575 4.1e-08 61.2 38 65.8
Sp7g06840 Schrenkiella parvula HOM05D006386 ORTHO05D007575 5.4e-08 60.8 39 66.7
Hund02537 Selenicereus undatus HOM05D006386 ORTHO05D007575 5.4e-08 60.8 41 63.4
Gohir.A11G034600 Gossypium hirsutum HOM05D006386 ORTHO05D007575 7.1e-08 60.5 41 63.4
Manes.01G023400 Manihot esculenta HOM05D006386 ORTHO05D007575 9.2e-08 60.1 60 46.7
Nitab4.5_0004342g0080 Nicotiana tabacum HOM05D006386 ORTHO05D007575 9.2e-08 60.1 41 58.5
CSS0007083 Camellia sinensis var. sinensis HOM05D006386 ORTHO05D007575 1.2e-07 59.7 41 61.0
Sabra15G0080700 Salix brachista HOM05D006386 ORTHO05D007575 1.2e-07 59.7 41 61.0
CiPaw.16G081700 Carya illinoinensis HOM05D006386 ORTHO05D007575 1.6e-07 59.3 41 61.0
Sc04g0004070 Simmondsia chinensis HOM05D006386 ORTHO05D007575 1.6e-07 59.3 41 58.5
MSTRG.4502 Avicennia marina HOM05D006386 ORTHO05D007575 2.7e-07 58.5 41 58.5
Cfa019518 Carpinus fangiana HOM05D006386 ORTHO05D007575 2.7e-07 58.5 41 58.5
BcaC02g09476 Brassica carinata HOM05D006386 ORTHO05D007575 3.5e-07 58.2 40 65.0
C04p43230 Brassica napus HOM05D006386 ORTHO05D007575 3.5e-07 58.2 40 65.0
BolC4t25901H Brassica oleracea HOM05D006386 ORTHO05D007575 3.5e-07 58.2 40 65.0
Carub.0007s3127 Capsella rubella HOM05D006386 ORTHO05D007575 3.5e-07 58.2 39 64.1
Peaxi162Scf00119g00118 Petunia axillaris HOM05D006386 ORTHO05D007575 3.5e-07 58.2 53 50.9
VMungo1215G2864 Vigna mungo HOM05D006386 ORTHO05D007575 3.5e-07 58.2 41 61.0
BcaB06g26945 Brassica carinata HOM05D006386 ORTHO05D007575 4.6e-07 57.8 39 64.1
Lsat_1_v5_gn_4_112801 Lactuca sativa HOM05D006386 ORTHO05D007575 6.0e-07 57.4 48 52.1
ECA246G4419 Erigeron canadensis HOM05D006386 ORTHO05D007575 1.0e-06 56.6 48 52.1
SHI18989 Sapria himalayana HOM05D006386 ORTHO05D007575 1.0e-06 56.6 41 61.0
Lalb_Chr13g0302571 Lupinus albus HOM05D006386 ORTHO05D007575 1.3e-06 56.2 41 53.7
PSO017G3209 Papaver somniferum HOM05D006386 ORTHO05D007575 1.3e-06 56.2 44 52.3
PSO478G3500 Papaver somniferum HOM05D006386 ORTHO05D007575 1.3e-06 56.2 44 52.3
Phvul.003G180600 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 1.3e-06 56.2 41 61.0
AUR62032161 Chenopodium quinoa HOM05D006386 ORTHO05D007575 1.7e-06 55.8 40 57.5
Lsat_1_v5_gn_4_112761 Lactuca sativa HOM05D006386 ORTHO05D007575 2.3e-06 55.5 41 53.7
SGA_v2.0_scaffold42G16024 Striga asiatica HOM05D006386 ORTHO05D007575 3.0e-06 55.1 41 58.5
Eucgr.K02638 Eucalyptus grandis HOM05D006386 ORTHO05D007575 3.9e-06 54.7 41 53.7
Phvul.002G142200 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 3.9e-06 54.7 41 58.5
CDE02G3865 Ceratophyllum demersum HOM05D006386 ORTHO05D007575 5.1e-06 54.3 41 53.7
Glyma.17G083800 Glycine max HOM05D006386 ORTHO05D007575 5.1e-06 54.3 41 56.1
PGR044G0997 Punica granatum HOM05D006386 ORTHO05D007575 5.1e-06 54.3 39 56.4
EL10Ac9g20981 Beta vulgaris HOM05D006386 ORTHO05D007575 6.6e-06 53.9 40 55.0
ECA232G1078 Erigeron canadensis HOM05D006386 ORTHO05D007575 6.6e-06 53.9 48 50.0
Medtr4g112610 Medicago truncatula HOM05D006386 ORTHO05D007575 8.6e-06 53.5 42 61.9
Oeu010193.1 Olea europaea HOM05D006386 ORTHO05D007575 8.6e-06 53.5 39 56.4


User provided reference genes

Program Settings