Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 8.3e-82 307.0 155 100.0
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 4.7e-53 211.5 123 81.3
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 2.7e-48 195.7 123 76.4
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 4.6e-48 194.9 123 75.6
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 2.1e-45 186.0 116 77.6
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 1.1e-44 183.7 123 71.5
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 3.1e-44 182.2 123 70.7
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 5.3e-44 181.4 123 72.4
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 2.0e-43 179.5 125 70.4
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.3e-42 176.8 116 73.3
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.7e-42 176.4 124 69.4
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 3.8e-42 175.3 122 69.7
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 8.4e-42 174.1 122 68.9
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 8.4e-42 174.1 122 68.9
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 8.4e-42 174.1 124 71.0
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.4e-41 173.3 122 68.9
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.9e-41 172.9 122 68.0
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 2.4e-41 172.6 123 68.3
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 2.4e-41 172.6 125 65.6
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.4e-41 172.6 123 69.9
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 2.4e-41 172.6 125 68.8
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 3.2e-41 172.2 129 66.7
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 3.2e-41 172.2 125 65.6
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.2e-41 171.8 124 67.7
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 7.1e-41 171.0 123 66.7
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 7.1e-41 171.0 123 65.9
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 1.2e-40 170.2 123 65.0
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.2e-40 170.2 116 70.7
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.6e-40 169.9 124 67.7
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.5e-40 168.7 128 65.6
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 6.0e-40 167.9 114 70.2
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 6.0e-40 167.9 126 65.9
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 1.0e-39 167.2 129 67.4
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.0e-39 167.2 123 65.0
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 3.9e-39 165.2 114 71.9
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 3.9e-39 165.2 126 67.5
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 6.6e-39 164.5 131 62.6
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 6.6e-39 164.5 131 62.6
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 6.6e-39 164.5 121 68.6
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 8.7e-39 164.1 125 66.4
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 8.7e-39 164.1 123 62.6
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 8.7e-39 164.1 129 64.3
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 8.7e-39 164.1 123 64.2
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 1.1e-38 163.7 115 70.4
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 1.1e-38 163.7 113 71.7
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.5e-38 163.3 115 66.1
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 2.5e-38 162.5 123 63.4
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 2.5e-38 162.5 121 64.5
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 3.3e-38 162.2 118 66.9
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 4.3e-38 161.8 123 65.9
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 4.3e-38 161.8 116 70.7
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 5.6e-38 161.4 123 61.0
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 7.3e-38 161.0 117 70.1
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 9.6e-38 160.6 125 59.2
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 1.3e-37 160.2 118 67.8
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 1.6e-37 159.8 123 62.6
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 1.6e-37 159.8 124 66.1
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 1.6e-37 159.8 121 62.0
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 2.1e-37 159.5 123 61.0
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 2.8e-37 159.1 125 65.6
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 4.8e-37 158.3 124 63.7
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 4.8e-37 158.3 122 63.1
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 4.8e-37 158.3 117 69.2
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 6.2e-37 157.9 114 66.7
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 8.1e-37 157.5 124 64.5
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 1.1e-36 157.1 123 59.3
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 1.8e-36 156.4 131 58.8
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 1.8e-36 156.4 117 65.8
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 2.4e-36 156.0 116 68.1
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 3.1e-36 155.6 123 57.7
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 5.3e-36 154.8 122 63.1
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 6.9e-36 154.5 140 55.7
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 2.0e-35 152.9 115 67.8
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 2.0e-35 152.9 122 59.8
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 2.6e-35 152.5 129 60.5
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 4.5e-35 151.8 123 57.7
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 4.5e-35 151.8 119 62.2
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 5.8e-35 151.4 131 58.0
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 7.6e-35 151.0 117 63.2
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 7.6e-35 151.0 126 58.7
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 1.3e-34 150.2 126 60.3
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 1.3e-34 150.2 119 63.9
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 2.2e-34 149.4 126 60.3
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 2.2e-34 149.4 110 68.2
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 2.2e-34 149.4 125 60.0
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 4.9e-34 148.3 134 58.2
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 1.9e-33 146.4 127 58.3
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 4.2e-33 145.2 134 59.7
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 5.4e-33 144.8 126 57.9
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 5.4e-33 144.8 126 57.9
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 7.1e-33 144.4 114 63.2
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 7.1e-33 144.4 115 59.1
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 7.1e-33 144.4 132 56.1
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 9.3e-33 144.1 119 62.2
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 2.1e-32 142.9 116 61.2
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 3.5e-32 142.1 119 61.3
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 1.0e-31 140.6 115 61.7
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 1.0e-31 140.6 115 61.7
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 1.0e-31 140.6 115 61.7
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 1.0e-31 140.6 115 61.7
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 1.3e-31 140.2 115 62.6
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 1.8e-31 139.8 115 60.9
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 2.3e-31 139.4 120 58.3
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 2.3e-31 139.4 115 60.9
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 3.9e-31 138.7 118 60.2
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 5.1e-31 138.3 116 61.2
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 5.1e-31 138.3 132 53.8
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 6.7e-31 137.9 115 60.9
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 1.1e-30 137.1 150 50.7
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 4.3e-30 135.2 116 61.2
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 7.4e-30 134.4 115 59.1
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 9.6e-30 134.0 131 54.2
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 1.6e-29 133.3 110 59.1
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 2.8e-29 132.5 115 59.1
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 4.8e-29 131.7 115 59.1
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 4.8e-29 131.7 115 59.1
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 4.8e-29 131.7 115 59.1
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 4.8e-29 131.7 115 59.1
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 1.2e-27 127.1 127 53.5
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 1.2e-27 127.1 115 54.8
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 5.8e-27 124.8 134 52.2
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 4.2e-25 118.6 158 44.9
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 4.2e-25 118.6 74 78.4
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 5.5e-25 118.2 115 54.8
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 3.1e-20 102.4 134 41.8
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 2.1e-16 89.7 76 55.3
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 4.8e-13 78.6 57 64.9
ATR0827G156 Amborella trichopoda HOM05D001012 ORTHO05D002597 6.5e-10 68.2 108 38.0
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 6.5e-10 68.2 129 34.1
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 1.1e-09 67.4 115 35.7
Lalb_Chr13g0302711 Lupinus albus HOM05D001012 ORTHO05D002597 1.4e-09 67.0 113 34.5
Cpa.g.sc1.163 Carica papaya HOM05D001012 ORTHO05D002597 2.5e-09 66.2 129 34.1
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 2.5e-09 66.2 128 34.4
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 4.2e-09 65.5 48 62.5
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 5.5e-09 65.1 65 52.3
Hund02547 Selenicereus undatus HOM05D001012 ORTHO05D002597 5.5e-09 65.1 113 34.5
DCAR_023157 Daucus carota HOM05D001012 ORTHO05D002597 7.2e-09 64.7 113 30.1
ECA247G3211 Erigeron canadensis HOM05D001012 ORTHO05D002597 9.4e-09 64.3 114 31.6
Sopen06g026700 Solanum pennellii HOM05D001012 ORTHO05D002597 1.2e-08 63.9 113 32.7
TPR.G2008 Trifolium pratense HOM05D001012 ORTHO05D002597 1.2e-08 63.9 111 33.3
Cpa.g.sc3.246 Carica papaya HOM05D001012 ORTHO05D002597 2.1e-08 63.2 113 31.0
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 2.7e-08 62.8 128 34.4
Solyc06g069420.3 Solanum lycopersicum HOM05D001012 ORTHO05D002597 2.7e-08 62.8 113 32.7
Ah.03g138680 Amaranthus hybridus HOM05D001012 ORTHO05D002597 3.6e-08 62.4 115 35.7
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 3.6e-08 62.4 128 32.0
QL10p020382 Quercus lobata HOM05D001012 ORTHO05D002597 4.6e-08 62.0 108 37.0
Thecc.03G107000 Theobroma cacao HOM05D001012 ORTHO05D002597 4.6e-08 62.0 113 31.9
Lsat_1_v5_gn_1_15301 Lactuca sativa HOM05D001012 ORTHO05D002597 6.1e-08 61.6 112 32.1
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 6.1e-08 61.6 131 32.1
PSO063G0991 Papaver somniferum HOM05D001012 ORTHO05D002597 6.1e-08 61.6 132 29.5
SMO367G0084 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 6.1e-08 61.6 113 36.3
EL10Ac6g14697 Beta vulgaris HOM05D001012 ORTHO05D002597 7.9e-08 61.2 128 33.6
HanXRQChr02g0042941 Helianthus annuus HOM05D001012 ORTHO05D002597 1.0e-07 60.8 112 33.0
PGSC0003DMG400024624 Solanum tuberosum HOM05D001012 ORTHO05D002597 1.0e-07 60.8 113 31.9
SalBow2G2442 Salvia bowleyana HOM05D001012 ORTHO05D002597 1.4e-07 60.5 114 34.2
SEGI_13166 Sequoiadendron giganteum HOM05D001012 ORTHO05D002597 1.4e-07 60.5 125 31.2
Actinidia13401 Actinidia chinensis HOM05D001012 ORTHO05D002597 1.8e-07 60.1 114 35.1
Nn4g23519 Nelumbo nucifera HOM05D001012 ORTHO05D002597 1.8e-07 60.1 127 31.5
PGR119G0423 Punica granatum HOM05D001012 ORTHO05D002597 1.8e-07 60.1 115 32.2
CiPaw.11G056400 Carya illinoinensis HOM05D001012 ORTHO05D002597 2.3e-07 59.7 108 37.0
CSS0029605 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D002597 5.1e-07 58.5 113 33.6
SGA_v2.0_scaffold104G30088 Striga asiatica HOM05D001012 ORTHO05D002597 5.1e-07 58.5 112 33.9
vmacro10443 Vaccinium macrocarpon HOM05D001012 ORTHO05D002597 5.1e-07 58.5 115 33.9
Ca_21759_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 6.7e-07 58.2 103 33.0
A06p42950 Brassica napus HOM05D001012 ORTHO05D002597 8.8e-07 57.8 117 35.0
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 1.5e-06 57.0 114 31.6
BcaC06g31170 Brassica carinata HOM05D001012 ORTHO05D002597 2.0e-06 56.6 117 34.2
FAN08G2332 Fragaria x ananassa HOM05D001012 ORTHO05D002597 2.0e-06 56.6 103 34.0
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.0e-06 56.6 44 59.1
BcaC06g31159 Brassica carinata HOM05D001012 ORTHO05D002597 3.3e-06 55.8 117 34.2
C07p34070 Brassica napus HOM05D001012 ORTHO05D002597 3.3e-06 55.8 117 34.2
BolC7t43921H Brassica oleracea HOM05D001012 ORTHO05D002597 3.3e-06 55.8 117 34.2
Oeu057215.1 Olea europaea HOM05D001012 ORTHO05D002597 4.3e-06 55.5 113 31.0
CiPaw.05G122600 Carya illinoinensis HOM05D001012 ORTHO05D002597 5.7e-06 55.1 128 31.2
DCAR_023745 Daucus carota HOM05D001012 ORTHO05D002597 5.7e-06 55.1 117 34.2
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 7.4e-06 54.7 39 66.7
SEGI_12548 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 7.4e-06 54.7 130 33.8
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 7.4e-06 54.7 121 32.2
A07p35460 Brassica napus HOM05D001012 ORTHO05D002597 9.7e-06 54.3 122 31.1
BraA07t31137Z Brassica rapa HOM05D001012 ORTHO05D002597 9.7e-06 54.3 122 31.1
CiPaw.06G094000 Carya illinoinensis HOM05D001012 ORTHO05D002597 9.7e-06 54.3 140 29.3
ECA246G1989 Erigeron canadensis HOM05D001012 ORTHO05D002597 9.7e-06 54.3 119 29.4
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 9.7e-06 54.3 38 68.4


User provided reference genes

Program Settings