Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 0.0e+00 1312.0 656 100.0
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 0.0e+00 1088.9 587 92.8
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 0.0e+00 1076.6 688 79.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.7e-306 1055.4 641 82.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 8.7e-298 1026.5 680 75.6
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 4.3e-297 1024.2 678 75.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.4e-295 1019.2 678 76.5
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.5e-294 1015.8 678 76.0
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 6.4e-293 1010.4 680 75.0
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.4e-293 1010.4 679 74.8
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 9.3e-292 1006.5 666 76.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 6.0e-291 1003.8 694 73.9
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.9e-291 1003.4 680 75.3
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.0e-290 1003.0 680 75.6
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 3.0e-290 1001.5 680 75.1
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.9e-289 998.8 680 74.9
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.6e-288 995.7 677 75.3
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 2.1e-288 995.3 675 74.7
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.1e-287 993.0 675 74.5
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 6.9e-287 990.3 655 76.6
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.3e-285 986.1 686 73.5
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.8e-285 984.6 691 72.6
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 3.5e-283 978.0 676 73.2
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 6.0e-283 977.2 661 73.7
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 3.9e-282 974.5 659 74.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.9e-281 972.2 659 73.7
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.3e-281 971.5 660 73.8
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 3.3e-281 971.5 663 74.7
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.4e-281 970.3 601 81.2
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 9.6e-281 969.9 662 73.9
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.6e-280 969.1 659 73.7
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.8e-280 968.4 671 71.8
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.8e-280 968.4 647 74.7
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 8.2e-280 966.8 670 72.2
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 5.3e-279 964.1 659 72.8
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.0e-278 962.2 632 75.9
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 2.0e-278 962.2 662 73.7
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.4e-278 961.4 678 72.0
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 4.5e-278 961.1 668 73.2
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 5.8e-278 960.7 646 73.7
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.8e-278 960.7 678 71.8
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 7.6e-278 960.3 676 71.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.9e-277 958.4 669 72.8
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 6.5e-277 957.2 668 72.6
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.4e-276 956.1 667 72.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.4e-276 956.1 658 72.6
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.9e-276 955.7 659 72.7
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 2.7e-275 951.8 655 72.8
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 6.0e-275 950.7 657 71.7
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 7.9e-275 950.3 601 79.4
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 1.5e-273 946.0 677 71.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.9e-273 945.7 636 75.2
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.6e-272 942.6 617 77.3
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.6e-272 942.6 634 73.2
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 3.7e-272 941.4 632 73.3
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 2.4e-271 938.7 632 73.4
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.9e-271 937.2 656 71.8
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 1.5e-270 936.0 632 72.9
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.0e-269 933.3 657 70.6
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.0e-269 933.3 660 72.0
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.7e-269 932.6 673 71.3
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-268 929.5 651 71.1
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 3.2e-268 928.3 649 71.2
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 7.2e-268 927.2 651 71.4
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.7e-267 925.2 650 71.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 2.7e-267 925.2 650 71.1
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 3.6e-267 924.9 650 71.1
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 3.0e-266 921.8 656 70.9
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.5e-265 919.5 633 73.1
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.5e-265 918.7 603 76.1
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 4.8e-264 914.4 602 76.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 8.2e-264 913.7 637 72.1
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 2.6e-262 908.7 632 71.4
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.5e-262 907.9 647 69.6
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 5.9e-262 907.5 637 71.1
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 5.9e-262 907.5 631 73.1
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 7.7e-262 907.1 600 75.2
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 2.2e-261 905.6 655 69.9
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 4.2e-260 901.4 637 70.8
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 4.2e-260 901.4 543 82.0
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 1.6e-259 899.4 604 73.8
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.6e-259 899.4 638 70.5
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 2.3e-258 895.6 637 70.3
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 6.7e-258 894.0 604 74.8
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.1e-257 893.3 636 70.0
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.7e-257 891.0 680 66.3
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 9.7e-257 890.2 638 69.9
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.3e-256 889.8 606 72.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.8e-255 885.9 638 69.6
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 5.9e-254 880.9 605 71.9
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.3e-248 863.2 633 68.9
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.2e-246 856.7 611 70.0
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.9e-244 849.4 741 60.7
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 7.2e-228 794.3 636 64.2
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 4.0e-226 788.5 665 61.5
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.6e-225 785.8 517 75.4
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.6e-222 776.5 650 62.3
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 3.1e-218 762.3 731 55.7
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 3.2e-215 752.3 656 61.0
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 4.1e-215 751.9 749 52.5
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.5e-214 748.8 748 51.3
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.3e-213 746.9 651 61.8
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 4.4e-209 731.9 472 79.0
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.9e-207 726.5 830 47.6
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 7.0e-207 724.5 599 62.1
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.1e-204 717.2 857 45.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.1e-194 684.1 457 74.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.3e-188 662.5 637 53.4
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.9e-176 622.1 524 62.4
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.7e-171 605.9 424 71.7
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 8.2e-163 578.2 547 55.6
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 4.6e-158 562.4 437 67.5
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 5.7e-124 449.1 304 71.1
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.8e-123 446.0 378 63.2
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.0e-112 411.8 262 78.6
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 5.2e-109 399.4 324 61.1
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.9e-98 364.4 251 70.9
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 7.8e-89 332.4 215 74.0
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 5.1e-88 329.7 528 40.3
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 4.4e-84 316.6 337 51.0
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.9e-64 250.4 155 75.5
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.1e-41 173.3 135 66.7
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.9e-36 156.8 139 58.3
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 2.9e-35 154.5 435 30.6
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 7.5e-15 86.7 65 67.7
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 3.1e-13 81.3 62 66.1
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.5e-10 70.5 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.7e-09 67.4 153 31.4
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 4.4e-07 60.8 50 60.0
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 9.8e-07 59.7 48 60.4


User provided reference genes

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