Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0131000 Rhododendron simsii HOM05D001990 ORTHO05D338933 5.7e-58 227.3 106 100.0
Rhsim03G0243900 Rhododendron simsii HOM05D001990 ORTHO05D002033 5.4e-08 61.2 40 75.0
vmacro06205 Vaccinium macrocarpon HOM05D001990 ORTHO05D002033 7.1e-08 60.8 40 75.0
Lj2g0018757 Lotus japonicus HOM05D001990 ORTHO05D002033 3.5e-07 58.5 40 72.5
Oeu013431.1 Olea europaea HOM05D001990 ORTHO05D002033 3.5e-07 58.5 40 72.5
QL02p085688 Quercus lobata HOM05D001990 ORTHO05D002033 3.5e-07 58.5 40 72.5
Sc08g0007190 Simmondsia chinensis HOM05D001990 ORTHO05D002033 3.5e-07 58.5 40 72.5
THA.LOC104808758 Tarenaya hassleriana HOM05D001990 ORTHO05D002033 3.5e-07 58.5 40 72.5
Ah.09g227800 Amaranthus hybridus HOM05D001990 ORTHO05D002033 4.6e-07 58.2 40 70.0
Eucgr.C01056 Eucalyptus grandis HOM05D001990 ORTHO05D002033 4.6e-07 58.2 40 72.5
PGR142G2986 Punica granatum HOM05D001990 ORTHO05D002033 4.6e-07 58.2 40 72.5
Hma1.2p1_2068F.1_g313090 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 6.0e-07 57.8 47 61.7
CSS0046867 Camellia sinensis var. sinensis HOM05D001990 ORTHO05D002033 7.8e-07 57.4 40 70.0
CSS0047910 Camellia sinensis var. sinensis HOM05D001990 ORTHO05D002033 7.8e-07 57.4 40 70.0
AUR62033396 Chenopodium quinoa HOM05D001990 ORTHO05D002033 7.8e-07 57.4 40 70.0
HanXRQChr03g0061911 Helianthus annuus HOM05D001990 ORTHO05D002033 7.8e-07 57.4 40 70.0
MD15G1187400 Malus domestica HOM05D001990 ORTHO05D002033 7.8e-07 57.4 39 71.8
Cc06_g09540 Coffea canephora HOM05D001990 ORTHO05D002033 1.0e-06 57.0 40 70.0
Dinv41592 Davidia involucrata HOM05D001990 ORTHO05D002033 1.0e-06 57.0 40 70.0
ECA240G4633 Erigeron canadensis HOM05D001990 ORTHO05D002033 1.0e-06 57.0 40 70.0
FAN26G0638 Fragaria x ananassa HOM05D001990 ORTHO05D002033 1.0e-06 57.0 39 71.8
FAN26G3053 Fragaria x ananassa HOM05D001990 ORTHO05D002033 1.0e-06 57.0 39 71.8
FAN28G1959 Fragaria x ananassa HOM05D001990 ORTHO05D002033 1.0e-06 57.0 39 71.8
MD02G1050200 Malus domestica HOM05D001990 ORTHO05D002033 1.0e-06 57.0 40 70.0
Aa31LG8G11240 Aethionema arabicum HOM05D001990 ORTHO05D002033 1.3e-06 56.6 40 70.0
Eucgr.C01058 Eucalyptus grandis HOM05D001990 ORTHO05D002033 1.3e-06 56.6 40 70.0
Lsat_1_v5_gn_7_40580 Lactuca sativa HOM05D001990 ORTHO05D002033 1.3e-06 56.6 40 70.0
Nitab4.5_0011667g0010 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.3e-06 56.6 40 70.0
FvH4_1g05110 Fragaria vesca HOM05D001990 ORTHO05D002033 1.7e-06 56.2 39 71.8
FAN19G1848 Fragaria x ananassa HOM05D001990 ORTHO05D002033 1.7e-06 56.2 39 71.8
PSO063G0958 Papaver somniferum HOM05D001990 ORTHO05D002033 1.7e-06 56.2 40 67.5
PSO782G0664 Papaver somniferum HOM05D001990 ORTHO05D002033 1.7e-06 56.2 48 58.3
TPR.G35271 Trifolium pratense HOM05D001990 ORTHO05D002033 1.7e-06 56.2 40 70.0
CiPaw.03G233700 Carya illinoinensis HOM05D001990 ORTHO05D002033 2.3e-06 55.8 40 70.0
COL.COLO4_34898 Corchorus olitorius HOM05D001990 ORTHO05D002033 2.3e-06 55.8 40 70.0
Psat1g040560 Pisum sativum HOM05D001990 ORTHO05D002033 2.3e-06 55.8 40 67.5
Sabra18G0066400 Salix brachista HOM05D001990 ORTHO05D002033 2.3e-06 55.8 40 70.0
Hma1.2p1_0018F.1_g013400 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 3.0e-06 55.5 40 70.0
A07p07830 Brassica napus HOM05D001990 ORTHO05D002033 3.9e-06 55.1 40 70.0
CANSAT56G1582 Cannabis sativa HOM05D001990 ORTHO05D002033 3.9e-06 55.1 40 67.5
CANSAT56G1747 Cannabis sativa HOM05D001990 ORTHO05D002033 3.9e-06 55.1 40 67.5
DCAR_017758 Daucus carota HOM05D001990 ORTHO05D002033 3.9e-06 55.1 40 67.5
TWI34G1366 Tripterygium wilfordii HOM05D001990 ORTHO05D002033 3.9e-06 55.1 40 67.5
Atru.chr7.1330 Acer truncatum HOM05D001990 ORTHO05D002033 5.1e-06 54.7 40 67.5
CAN.G624.33 Capsicum annuum HOM05D001990 ORTHO05D002033 5.1e-06 54.7 40 67.5
Haze_25701 Corylus avellana HOM05D001990 ORTHO05D002033 5.1e-06 54.7 40 67.5
Lj1g0007107 Lotus japonicus HOM05D001990 ORTHO05D002033 5.1e-06 54.7 42 61.9
RcHm_v2.0_Chr2g0090751 Rosa chinensis HOM05D001990 ORTHO05D002033 5.1e-06 54.7 39 71.8
ClCG11G002510 Citrullus lanatus HOM05D001990 ORTHO05D002033 6.6e-06 54.3 40 67.5
MELO3C004553.2 Cucumis melo HOM05D001990 ORTHO05D002033 6.6e-06 54.3 40 67.5
CsaV3_2G002310 Cucumis sativus L. HOM05D001990 ORTHO05D002033 6.6e-06 54.3 40 67.5
CARHR100610 Cardamine hirsuta HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 67.5
Ca_25522_v3 Cicer arietinum L. HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 70.0
Duzib150G0021 Durio zibethinus HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 67.5
Lj1g0023574 Lotus japonicus HOM05D001990 ORTHO05D002033 8.6e-06 53.9 42 61.9
Lj4g0024675 Lotus japonicus HOM05D001990 ORTHO05D002033 8.6e-06 53.9 42 64.3
Peaxi162Scf00560g00216 Petunia axillaris HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 65.0
Phvul.004G162100 Phaseolus vulgaris HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 67.5
Potri.018G075200 Populus trichocarpa HOM05D001990 ORTHO05D002033 8.6e-06 53.9 40 65.0


User provided reference genes

Program Settings