Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.6e-269 932.2 467 100.0
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.3e-268 929.1 467 99.8
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.4e-171 605.5 448 73.7
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.3e-170 603.6 448 73.4
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.3e-167 593.6 445 72.1
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.7e-160 569.3 429 72.0
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.5e-160 568.9 392 75.5
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 6.0e-160 568.2 391 74.9
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-159 566.2 427 71.9
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 3.0e-159 565.8 393 76.1
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 5.1e-159 565.1 389 76.1
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.6e-159 564.7 425 71.1
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.1e-158 563.9 419 70.9
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.9e-158 563.1 427 71.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 4.3e-158 562.0 422 70.9
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 4.3e-158 562.0 417 70.7
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.3e-157 560.5 406 73.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.6e-157 558.9 391 74.9
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.1e-156 557.4 440 69.5
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.1e-156 557.4 417 70.3
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.8e-156 556.6 428 70.3
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 3.1e-156 555.8 428 70.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 4.0e-156 555.4 409 70.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.0e-156 555.4 416 69.5
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.2e-155 553.9 405 70.9
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.9e-155 550.8 400 72.2
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 9.9e-155 550.8 392 73.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 6.4e-154 548.1 460 65.0
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 2.4e-153 546.2 393 72.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 2.4e-153 546.2 429 68.8
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.2e-153 545.4 428 68.5
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 5.4e-153 545.0 412 69.9
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.1e-152 543.1 428 68.5
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 4.6e-152 542.0 415 69.4
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 3.0e-151 539.3 392 71.4
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 3.0e-151 539.3 395 71.6
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 3.9e-151 538.9 422 68.7
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 6.7e-151 538.1 387 71.1
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.5e-150 536.2 392 71.2
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 4.3e-150 535.4 392 70.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 4.3e-150 535.4 398 69.8
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 4.3e-150 535.4 398 69.6
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 7.4e-150 534.6 387 71.3
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 7.4e-150 534.6 443 64.8
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 9.6e-150 534.3 410 68.3
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.3e-149 533.9 402 69.2
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.6e-149 533.5 401 68.3
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 2.8e-149 532.7 387 71.8
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 2.8e-149 532.7 404 69.1
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.8e-149 532.7 395 69.9
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 4.8e-149 531.9 417 67.4
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 6.2e-149 531.6 418 66.3
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 8.1e-149 531.2 387 72.6
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 8.1e-149 531.2 407 67.8
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 8.1e-149 531.2 398 69.1
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.4e-148 530.4 419 67.3
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 4.0e-148 528.9 428 66.4
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.0e-148 528.9 395 68.9
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.0e-148 528.9 400 69.8
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 2.2e-146 523.1 406 67.5
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 2.5e-145 519.6 396 69.2
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 7.1e-145 518.1 416 67.1
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-144 517.3 457 63.0
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.7e-144 516.2 408 67.4
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.0e-144 515.0 391 69.6
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 7.9e-144 514.6 428 65.9
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.9e-142 510.0 391 68.5
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 7.4e-142 508.1 393 67.7
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.3e-141 507.3 419 66.1
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.0e-139 500.0 429 65.5
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.0e-138 497.7 408 63.0
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.7e-138 496.9 399 63.9
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 5.0e-138 495.4 393 65.6
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.9e-137 493.4 389 66.8
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 5.5e-137 491.9 393 63.9
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 9.3e-137 491.1 403 63.5
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 9.3e-137 491.1 400 63.8
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 9.3e-137 491.1 396 66.7
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-136 489.6 445 59.8
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 6.1e-136 488.4 381 66.7
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 3.0e-135 486.1 407 62.7
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.1e-135 485.3 417 61.2
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.7e-135 484.6 417 61.2
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 2.5e-134 483.0 383 64.2
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 3.3e-134 482.6 392 65.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 7.4e-134 481.5 386 62.7
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 7.4e-134 481.5 386 64.5
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 8.2e-133 478.0 408 61.5
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.0e-131 473.4 419 61.3
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 8.5e-130 468.0 369 65.9
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 2.3e-127 459.9 395 62.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 2.8e-125 453.0 395 60.8
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 3.7e-125 452.6 398 59.3
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.1e-121 441.0 447 55.5
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.9e-121 440.3 390 58.7
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.3e-119 433.3 392 58.4
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-117 427.6 416 57.7
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.8e-117 425.6 395 56.5
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 8.2e-117 424.9 387 58.4
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 9.1e-116 421.4 313 69.6
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.6e-115 419.9 395 55.9
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 7.2e-113 411.8 417 55.4
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.1e-110 404.4 384 57.6
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.5e-110 404.1 443 51.0
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 9.7e-110 401.4 390 53.6
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 9.7e-110 401.4 396 54.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 4.8e-109 399.1 386 54.4
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-108 397.5 333 63.7
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-108 397.1 377 56.2
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.8e-108 397.1 388 53.4
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.2e-106 390.2 392 52.8
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 8.0e-104 381.7 379 55.1
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.8e-103 380.6 391 52.2
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 4.5e-99 365.9 389 53.7
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 3.8e-98 362.8 240 75.8
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.0e-95 354.8 235 75.3
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.0e-91 340.5 373 50.4
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.7e-86 322.4 378 49.5
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-83 313.9 211 73.9
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.6e-83 312.8 350 53.1
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.8e-80 303.5 204 70.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.4e-79 301.2 213 75.6
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-58 231.5 228 60.1
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 3.6e-56 223.4 221 54.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 8.4e-53 212.2 345 38.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.9e-44 184.5 273 44.0
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 5.6e-41 172.9 116 71.6
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-40 171.0 111 74.8
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 4.8e-40 169.9 116 72.4
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 8.1e-40 169.1 116 72.4
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 3.8e-37 160.2 210 43.3
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 6.4e-37 159.5 151 53.6
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 1.9e-36 157.9 116 69.8
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 9.3e-36 155.6 106 72.6
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-35 155.2 112 69.6
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 1.6e-35 154.8 152 57.2
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.1e-33 148.7 190 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.1e-32 144.4 170 48.8
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 4.8e-32 143.3 86 80.2
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 6.5e-29 132.9 96 70.8
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.3e-25 120.2 73 84.9
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 3.1e-23 114.0 138 50.7
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.5e-22 111.7 359 24.8
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 8.4e-21 105.9 125 50.4
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.1e-20 105.5 366 23.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 3.2e-20 104.0 77 67.5
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 3.2e-20 104.0 117 49.6
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.5e-19 100.5 64 78.1
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 8.7e-18 95.9 125 48.0
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 3.3e-17 94.0 73 67.1
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-15 88.2 57 77.2
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 2.4e-15 87.8 113 48.7
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.4e-15 87.8 66 68.2
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 4.5e-14 83.6 104 46.2
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 4.5e-14 83.6 104 46.2
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 1.7e-13 81.6 141 39.0
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 2.2e-13 81.3 56 69.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 3.8e-13 80.5 125 42.4
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 7.2e-12 76.3 76 53.9
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.8e-10 71.6 71 54.9
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 2.0e-09 68.2 98 46.9
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-08 65.5 96 41.7
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-08 65.5 96 41.7
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.3e-08 65.5 96 41.7
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.3e-08 65.5 96 41.7
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 2.8e-08 64.3 308 23.7
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 3.7e-08 63.9 396 23.7
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 3.7e-08 63.9 243 30.5
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 8.2e-08 62.8 96 41.7
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 4.1e-07 60.5 365 23.8
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 5.3e-07 60.1 50 56.0
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 1.2e-06 58.9 256 24.2
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.5e-06 58.5 87 40.2
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 2.6e-06 57.8 42 61.9
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 2.6e-06 57.8 154 31.2
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 2.6e-06 57.8 137 32.1
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 7.7e-06 56.2 238 28.6
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 7.7e-06 56.2 245 26.5


User provided reference genes

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