Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0129900 Rhododendron simsii HOM05D007058 ORTHO05D009036 4.1e-102 374.8 194 100.0
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 3.8e-15 85.9 54 77.8
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 4.9e-15 85.5 54 74.1
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 4.9e-15 85.5 54 74.1
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 1.4e-14 84.0 54 75.9
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 1.9e-14 83.6 54 75.9
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.4e-14 83.2 54 75.9
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.4e-14 83.2 54 75.9
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 3.2e-14 82.8 54 75.9
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 7.1e-14 81.6 54 74.1
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 9.3e-14 81.3 68 61.8
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 1.2e-13 80.9 54 74.1
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.2e-13 80.9 69 59.4
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 1.2e-13 80.9 54 72.2
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 1.2e-13 80.9 46 84.8
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.6e-13 80.5 69 59.4
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 1.6e-13 80.5 54 72.2
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 2.1e-13 80.1 54 74.1
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 2.1e-13 80.1 65 63.1
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 2.1e-13 80.1 65 63.1
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 2.7e-13 79.7 54 74.1
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 2.7e-13 79.7 54 74.1
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 3.5e-13 79.3 46 84.8
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.5e-13 79.3 69 59.4
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.5e-13 79.3 69 58.0
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 4.6e-13 79.0 54 72.2
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 4.6e-13 79.0 51 74.5
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 6.0e-13 78.6 54 70.4
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 6.0e-13 78.6 45 84.4
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 7.8e-13 78.2 60 65.0
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 1.0e-12 77.8 54 72.2
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 1.0e-12 77.8 54 70.4
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 2.3e-12 76.6 81 49.4
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 2.3e-12 76.6 51 72.5
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 2.3e-12 76.6 54 64.8
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 3.0e-12 76.3 54 72.2
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 3.9e-12 75.9 60 65.0
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 3.9e-12 75.9 46 80.4
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 6.6e-12 75.1 45 84.4
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 3.3e-11 72.8 54 66.7
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 3.3e-11 72.8 54 66.7
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 4.3e-11 72.4 67 59.7
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 5.6e-11 72.0 54 64.8
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 5.6e-11 72.0 54 64.8
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 5.6e-11 72.0 45 77.8
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 9.6e-11 71.2 54 63.0
AUR62029918 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.3e-10 70.9 46 73.9
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 1.3e-10 70.9 45 80.0
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 1.6e-10 70.5 54 61.1
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 1.6e-10 70.5 46 71.7
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.6e-10 70.5 45 77.8
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.6e-10 70.5 45 77.8
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 2.1e-10 70.1 84 50.0
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 2.1e-10 70.1 54 64.8
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 2.8e-10 69.7 47 74.5
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 3.6e-10 69.3 45 73.3
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 4.8e-10 68.9 54 63.0
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 4.8e-10 68.9 45 75.6
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 4.8e-10 68.9 45 75.6
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 1.4e-09 67.4 84 46.4
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 1.4e-09 67.4 54 63.0
Ah.11g045170 Amaranthus hybridus HOM05D007058 ORTHO05D009036 2.4e-09 66.6 45 75.6
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 2.4e-09 66.6 45 75.6
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 5.3e-09 65.5 54 55.6
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 6.9e-09 65.1 44 72.7
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 6.9e-09 65.1 54 61.1
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 6.9e-09 65.1 52 55.8
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 5.8e-08 62.0 65 49.2
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 5.8e-08 62.0 62 50.0
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 5.8e-08 62.0 62 50.0
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 5.8e-08 62.0 62 50.0
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 5.8e-08 62.0 62 50.0
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 5.8e-08 62.0 54 55.6
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 7.6e-08 61.6 54 53.7
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 1.3e-07 60.8 60 51.7
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 1.3e-07 60.8 54 55.6
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 1.3e-07 60.8 54 55.6
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 1.7e-07 60.5 54 53.7
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 1.7e-07 60.5 54 53.7
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 2.2e-07 60.1 54 55.6
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 4.9e-07 58.9 61 50.8
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 6.4e-07 58.5 54 51.9
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 1.4e-06 57.4 46 58.7
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.4e-06 57.4 54 51.9


User provided reference genes

Program Settings