Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 9.3e-142 506.9 263 100.0
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.5e-46 189.9 288 48.3
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 8.1e-45 184.9 288 46.5
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 9.2e-41 171.4 271 46.5
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.6e-40 170.6 299 44.1
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 8.9e-36 154.8 287 41.8
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.5e-35 154.1 287 40.8
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.0e-35 153.7 275 43.3
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.8e-35 152.1 286 40.2
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 9.9e-35 151.4 287 40.4
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 9.9e-35 151.4 287 40.8
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 8.4e-34 148.3 286 41.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.4e-33 147.5 285 41.4
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.4e-33 145.6 285 41.4
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 7.1e-33 145.2 303 39.6
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 9.2e-33 144.8 292 37.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.2e-32 144.4 180 50.6
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.2e-32 144.4 290 40.3
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.2e-32 144.4 288 40.3
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.5e-32 142.9 277 40.1
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 4.6e-32 142.5 308 38.6
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 6.0e-32 142.1 295 40.3
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 6.0e-32 142.1 285 40.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.0e-32 142.1 286 40.9
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 7.8e-32 141.7 296 40.9
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.0e-31 141.4 289 39.1
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.0e-31 141.4 287 40.1
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 3.9e-31 139.4 288 39.2
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 8.7e-31 138.3 285 40.7
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.1e-30 137.9 290 39.7
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.5e-30 137.5 290 38.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.3e-30 136.3 288 40.6
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 3.3e-30 136.3 295 41.4
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 3.3e-30 136.3 288 39.2
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.3e-30 136.3 84 89.3
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 7.3e-30 135.2 287 39.4
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 4.7e-29 132.5 301 39.2
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 6.2e-29 132.1 312 38.5
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.4e-28 131.0 283 40.6
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-28 131.0 293 38.2
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.8e-28 130.6 301 38.5
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.4e-28 130.2 253 39.9
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.4e-28 130.2 283 40.6
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 4.0e-28 129.4 304 38.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 5.2e-28 129.0 156 56.4
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 6.9e-28 128.6 189 48.7
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.2e-27 127.9 278 38.5
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.2e-27 127.9 297 37.0
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 7.6e-27 125.2 327 35.2
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-26 124.4 297 37.7
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.7e-26 124.0 276 38.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 3.8e-26 122.9 150 54.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 4.9e-26 122.5 219 42.5
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 6.4e-26 122.1 271 37.3
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 6.4e-26 122.1 243 39.5
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.1e-25 121.3 290 36.2
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.1e-25 121.3 276 38.4
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.9e-25 120.6 294 38.1
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 7.1e-25 118.6 296 35.1
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 3.5e-24 116.3 301 36.5
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 4.6e-24 115.9 298 37.9
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 6.0e-24 115.5 178 44.9
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 6.0e-24 115.5 219 40.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-23 114.4 300 35.0
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.3e-23 114.4 177 45.2
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.7e-23 114.0 177 44.6
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.3e-23 113.6 177 44.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-23 113.2 177 44.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.0e-23 113.2 177 44.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.9e-23 112.8 179 45.3
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 3.9e-23 112.8 178 45.5
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 5.1e-23 112.5 183 43.7
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 5.1e-23 112.5 143 55.9
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.1e-22 111.3 147 51.7
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 2.5e-22 110.2 304 34.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.3e-22 109.8 177 43.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.6e-22 109.0 177 44.6
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 7.3e-22 108.6 301 35.2
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 7.3e-22 108.6 277 34.3
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 9.6e-22 108.2 328 32.3
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 9.6e-22 108.2 176 44.3
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.3e-21 107.8 144 53.5
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.3e-21 107.8 184 42.9
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.1e-21 107.1 340 32.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 3.6e-21 106.3 178 43.8
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.4e-20 104.4 311 34.4
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 4.0e-20 102.8 177 42.9
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.2e-19 101.3 152 49.3
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 2.6e-19 100.1 280 36.8
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 4.5e-19 99.4 298 35.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 9.9e-19 98.2 287 33.8
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 9.9e-19 98.2 180 43.9
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 4.9e-18 95.9 157 47.8
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 4.9e-18 95.9 146 49.3
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.1e-17 94.7 285 33.0
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 2.4e-17 93.6 286 33.9
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.2e-17 93.2 154 45.5
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 5.4e-17 92.4 265 33.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 9.3e-17 91.7 147 45.6
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.5e-16 89.7 166 44.6
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.9e-16 88.6 148 46.6
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 7.9e-16 88.6 157 45.2
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.8e-15 87.4 168 42.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 5.6e-14 82.4 280 31.1
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 3.7e-13 79.7 266 30.8
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.8e-13 79.3 42 90.5
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.1e-12 78.2 40 92.5
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.4e-12 77.8 275 30.9
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 2.4e-12 77.0 41 95.1
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 3.4e-11 73.2 182 34.1
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.9e-11 71.6 42 83.3
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.3e-10 71.2 42 85.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 3.8e-10 69.7 40 85.0
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.6e-08 64.3 148 35.1
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 2.1e-08 63.9 40 75.0
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.3e-07 61.2 81 45.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.8e-07 60.8 86 41.9
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.0e-07 60.1 36 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.1e-06 58.2 45 66.7
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 5.6e-06 55.8 86 43.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 5.6e-06 55.8 145 37.2


User provided reference genes

Program Settings