Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 6.9e-229 797.0 408 100.0
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 4.8e-89 332.4 441 50.6
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 4.8e-89 332.4 410 48.8
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 1.0e-83 314.7 435 45.5
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 5.2e-75 285.8 425 44.7
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 2.7e-71 273.5 475 43.2
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 2.1e-68 263.8 423 41.4
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 6.8e-67 258.8 437 41.0
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 1.5e-66 257.7 428 41.1
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 9.8e-66 255.0 433 40.0
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 9.8e-66 255.0 425 42.8
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 8.3e-65 251.9 466 40.6
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 1.6e-63 247.7 463 39.1
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 3.5e-63 246.5 402 41.0
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 6.0e-63 245.7 445 37.5
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.3e-62 244.6 430 42.1
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 5.1e-62 242.7 430 39.3
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 8.6e-62 241.9 424 40.6
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 1.9e-61 240.7 432 41.4
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 2.5e-61 240.4 460 37.8
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 2.3e-59 233.8 435 38.6
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.0e-58 230.7 440 38.6
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 2.0e-58 230.7 427 35.8
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 2.0e-58 230.7 410 38.0
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 4.4e-58 229.6 393 40.7
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 5.8e-58 229.2 420 39.3
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 2.9e-57 226.9 436 39.9
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 8.3e-57 225.3 464 37.1
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 1.1e-56 224.9 428 36.2
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 1.9e-56 224.2 454 37.9
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 2.4e-56 223.8 440 36.1
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 4.1e-56 223.0 430 35.6
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 5.4e-56 222.6 464 36.4
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 5.4e-56 222.6 452 36.1
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 9.2e-56 221.9 442 34.4
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 1.6e-55 221.1 449 38.3
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 1.6e-55 221.1 427 38.4
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 2.1e-55 220.7 461 35.1
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 2.1e-55 220.7 461 35.1
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 2.1e-55 220.7 431 36.0
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 4.6e-55 219.5 434 36.6
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 6.0e-55 219.2 433 37.9
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 1.7e-54 217.6 450 34.0
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 8.6e-54 215.3 426 39.0
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 8.6e-54 215.3 439 37.8
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 1.1e-53 214.9 463 33.3
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 1.5e-53 214.5 406 37.2
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 1.2e-52 211.5 487 35.3
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 3.6e-52 209.9 439 32.8
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 6.2e-52 209.1 421 38.7
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 1.4e-51 208.0 453 36.0
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 1.4e-51 208.0 419 35.6
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 1.4e-51 208.0 420 39.3
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 3.1e-51 206.8 465 39.6
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 8.9e-51 205.3 444 34.0
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.5e-50 204.5 437 35.7
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 2.0e-50 204.1 420 35.5
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 1.7e-49 201.1 435 35.6
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 3.8e-49 199.9 421 37.8
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 3.8e-49 199.9 421 37.8
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 3.8e-49 199.9 421 34.9
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 6.4e-49 199.1 463 34.1
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 4.2e-48 196.4 438 36.1
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 3.5e-47 193.4 420 38.1
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 3.5e-47 193.4 418 36.8
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 3.5e-47 193.4 420 35.0
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 4.6e-47 193.0 252 45.6
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 7.8e-47 192.2 447 34.5
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 1.0e-46 191.8 446 35.2
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 1.1e-45 188.3 423 34.5
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.9e-45 187.6 247 49.0
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 1.3e-44 184.9 428 34.6
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.6e-44 184.5 421 36.6
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 2.1e-44 184.1 452 34.1
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 4.8e-44 183.0 232 51.3
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 1.1e-43 181.8 359 39.3
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 2.4e-43 180.6 267 43.1
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 1.2e-42 178.3 453 31.8
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 2.0e-42 177.6 425 34.1
vmacro17571 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 4.4e-42 176.4 135 68.9
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 1.4e-40 171.4 333 38.4
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 4.3e-37 159.8 261 40.2
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.5e-34 151.4 334 33.2
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 6.4e-33 146.0 266 39.8
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.1e-32 145.2 396 32.8
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 3.5e-31 140.2 460 30.9
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 3.9e-30 136.7 353 33.1
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 3.3e-29 133.7 232 34.9
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 8.1e-28 129.0 96 67.7
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 2.4e-27 127.5 252 37.7
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 5.3e-27 126.3 184 50.5
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 3.4e-26 123.6 82 78.0
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 2.3e-22 110.9 312 34.9
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 4.3e-21 106.7 111 48.6
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 4.3e-21 106.7 222 35.6
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 4.3e-21 106.7 249 34.1
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 2.1e-20 104.4 193 35.2
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 2.4e-19 100.9 78 64.1
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 4.1e-19 100.1 186 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 5.0e-17 93.2 151 36.4
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 5.0e-17 93.2 191 33.0
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 6.1e-15 86.3 130 40.0
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 4.8e-12 76.6 181 33.1
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 4.8e-12 76.6 181 33.1
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 4.5e-10 70.1 65 47.7
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.0e-09 68.9 56 60.7
VMungo0251G2390 Vigna mungo HOM05D007068 ORTHO05D008590 2.7e-07 60.8 85 38.8
Cre03.g201700 Chlamydomonas reinhardtii HOM05D007068 ORTHO05D008590 4.6e-07 60.1 191 29.3
PSO339G5387 Papaver somniferum HOM05D007068 ORTHO05D008590 6.7e-06 56.2 165 26.1


User provided reference genes

Program Settings