Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 0.0e+00 1081.6 551 100.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.5e-221 772.3 542 72.7
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 7.0e-216 754.2 551 71.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 4.7e-212 741.5 509 76.2
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.3e-198 696.0 548 64.6
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.9e-189 666.4 549 63.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 9.5e-189 664.1 549 63.8
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.6e-188 663.3 549 63.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 4.9e-185 651.7 553 62.0
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.4e-184 649.4 551 62.8
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.0e-182 644.0 554 61.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.3e-182 643.7 548 62.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.9e-181 639.8 553 60.8
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.6e-180 636.7 561 61.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 8.9e-179 630.9 550 60.0
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 3.4e-178 629.0 553 60.4
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 8.3e-177 624.4 550 60.4
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 4.1e-176 622.1 554 59.9
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 9.2e-176 620.9 545 60.0
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 9.2e-176 620.9 539 61.2
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 8.6e-174 614.4 549 59.0
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.5e-173 613.6 543 59.7
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.1e-171 607.4 541 60.1
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 5.2e-171 605.1 544 58.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.6e-170 602.8 544 58.6
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 7.6e-170 601.3 563 60.0
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.9e-169 599.4 545 60.6
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 4.1e-168 595.5 548 57.8
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.4e-168 595.1 551 57.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 9.2e-168 594.3 692 51.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.6e-167 593.6 541 57.7
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.6e-167 593.6 542 57.7
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 2.7e-167 592.8 558 59.1
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-166 590.1 541 57.5
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-166 588.6 544 58.1
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 5.1e-166 588.6 556 57.6
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.6e-166 587.8 545 57.6
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.6e-166 587.8 542 57.4
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.1e-165 587.4 546 57.5
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.5e-165 587.0 544 57.4
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 3.3e-165 585.9 555 57.7
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.6e-165 584.3 558 58.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.8e-164 582.8 548 58.9
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.4e-163 580.5 558 57.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 4.0e-163 578.9 540 57.2
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 6.9e-163 578.2 583 54.4
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 8.9e-163 577.8 548 57.5
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 7.6e-162 574.7 543 57.3
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.3e-161 573.9 549 57.0
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.3e-161 573.9 541 57.1
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.9e-161 572.0 548 57.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 4.2e-160 568.9 450 66.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 9.3e-160 567.8 556 57.0
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.6e-159 567.0 540 58.5
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.6e-159 565.5 544 55.9
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.0e-158 564.3 524 57.4
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.0e-158 564.3 548 55.3
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.0e-158 562.8 540 57.8
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.0e-158 562.8 549 56.5
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 3.9e-158 562.4 527 56.9
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 3.9e-158 562.4 557 56.6
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 6.6e-158 561.6 362 80.1
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 8.7e-158 561.2 540 57.0
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 4.8e-156 555.4 540 57.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.3e-155 552.0 540 57.4
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 9.9e-154 547.7 540 56.9
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 8.4e-153 544.7 583 53.7
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 6.0e-151 538.5 553 53.9
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.3e-145 520.8 474 58.4
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.1e-143 513.5 487 58.5
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.5e-143 512.7 542 52.2
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-142 510.8 542 53.3
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 3.9e-142 509.2 538 53.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.5e-141 506.5 540 53.0
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.3e-141 505.8 540 53.1
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.3e-141 505.8 542 53.9
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 4.0e-139 499.2 540 52.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 6.9e-139 498.4 541 52.3
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.2e-137 493.4 489 54.4
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 3.9e-134 482.6 540 50.0
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 8.7e-134 481.5 543 50.8
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.1e-133 481.1 543 51.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.5e-133 479.9 543 50.8
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.3e-133 479.2 540 50.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 9.7e-133 478.0 543 51.7
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.6e-132 477.2 542 50.2
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.8e-132 476.5 542 50.2
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 3.7e-132 476.1 540 50.0
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.6e-130 469.9 540 50.4
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.0e-129 468.0 483 55.3
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.1e-128 464.5 527 52.6
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.2e-127 461.1 387 63.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.6e-127 460.7 394 61.7
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.6e-127 459.5 470 54.0
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.3e-124 448.7 570 47.5
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 4.5e-122 442.6 554 47.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.1e-117 427.9 356 61.2
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 2.3e-110 403.7 549 46.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 4.1e-99 366.3 330 59.7
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.2e-97 360.5 380 54.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.0e-94 351.7 398 47.5
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.7e-92 344.4 388 49.0
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.3e-86 323.9 327 57.2
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.4e-85 320.1 563 39.1
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 8.3e-84 315.5 565 37.5
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.6e-79 301.2 269 59.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.8e-79 300.4 576 36.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.0e-78 297.0 438 40.0
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.0e-74 284.3 438 42.0
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 9.5e-72 275.4 348 47.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.4e-70 271.6 219 62.1
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.8e-70 271.2 278 54.0
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 5.4e-67 259.6 264 53.8
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.7e-63 246.5 278 51.4
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.2e-62 243.0 166 71.7
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.5e-61 241.5 267 51.7
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.2e-59 232.3 265 51.3
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.2e-58 231.9 408 37.0
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.1e-58 231.1 162 72.8
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.3e-56 223.4 196 57.1
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.2e-50 205.3 155 67.1
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 3.5e-50 203.8 122 86.9
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-43 182.2 241 46.5
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.2e-43 180.6 241 46.5
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.1e-39 167.9 281 39.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.6e-37 161.0 159 54.7
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-34 152.1 122 64.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.5e-34 150.6 246 43.5
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.6e-31 141.7 138 55.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.2e-21 109.0 139 48.2
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 7.4e-16 89.7 103 50.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 6.3e-15 86.7 183 33.3
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.1e-14 85.9 81 58.0
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-12 79.0 96 49.0
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-12 79.0 96 49.0
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.7e-10 71.2 98 42.9
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 6.1e-10 70.1 411 26.3
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 4.8e-07 60.5 143 31.5


User provided reference genes

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