Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1464.1 723 100.0
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1236.9 723 84.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1224.5 720 83.3
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1218.4 720 82.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1216.8 720 82.5
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 720 82.1
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1211.8 723 82.4
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 723 81.7
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1206.8 720 81.8
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1206.8 720 82.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 719 80.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 720 82.1
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 717 81.9
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 723 79.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 724 80.7
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 720 80.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 723 80.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 721 81.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 720 79.4
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 720 80.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 720 80.3
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 720 79.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 723 81.3
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 720 79.6
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 720 78.9
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 720 78.9
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 718 79.4
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 720 78.6
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1168.7 699 81.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 719 79.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 718 79.2
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1163.3 723 78.4
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 721 78.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1158.7 719 78.4
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 724 78.5
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 722 78.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 719 78.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 720 79.0
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 720 79.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 719 78.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 719 78.2
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 720 78.2
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 719 78.2
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 720 78.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 720 78.6
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 720 77.9
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 719 77.9
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 719 77.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 723 77.6
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 717 78.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 720 77.9
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 720 77.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 720 77.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 719 76.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 719 77.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 719 77.5
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 725 77.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 720 77.2
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 720 77.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 724 77.3
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 717 77.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 721 77.0
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 722 75.6
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 720 77.4
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 719 78.6
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 719 75.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 717 76.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 720 77.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 720 76.1
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 722 74.9
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 721 75.0
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 718 76.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 719 76.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 721 74.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 719 75.9
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 730 75.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 721 73.8
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1114.8 723 74.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 723 74.4
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1112.4 719 76.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 640 85.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 723 75.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 765 72.5
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1106.3 717 75.5
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 712 73.7
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 723 73.7
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1095.1 720 75.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1095.1 672 78.7
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1091.6 752 73.1
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1084.3 746 72.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1083.6 706 75.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 706 75.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1081.6 738 71.1
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 9.9e-312 1073.2 721 75.0
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 9.2e-309 1063.1 720 73.9
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.1e-308 1062.0 720 73.6
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 2.1e-308 1062.0 719 72.0
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-305 1052.0 703 72.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.6e-291 1003.8 607 80.1
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 3.3e-290 1001.5 730 67.9
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.0e-287 992.3 715 68.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.2e-284 983.0 727 67.0
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.1e-275 951.0 664 71.8
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 5.0e-262 907.9 734 65.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.3e-258 895.2 565 78.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.0e-255 885.9 606 71.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.1e-248 862.1 492 87.0
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-246 856.3 592 72.6
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.4e-240 835.9 722 58.4
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.2e-218 763.8 722 53.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.5e-218 761.1 725 54.9
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.8e-218 760.8 724 54.4
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.8e-218 760.8 724 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 2.0e-215 753.1 733 54.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-210 736.9 723 52.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.2e-191 674.1 386 83.4
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.9e-149 533.9 741 41.6
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 4.5e-146 522.7 403 65.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.0e-134 483.4 529 51.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.5e-104 384.0 781 34.8
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.8e-103 380.6 323 60.1
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 8.0e-103 379.0 273 70.0
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.4e-99 367.5 831 31.9
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.0e-97 359.8 268 65.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.8e-78 296.2 251 64.1
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.0e-77 294.7 247 61.1
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 3.0e-73 280.8 179 74.3
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.6e-73 279.6 193 73.1
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.4e-69 266.9 166 76.5
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.8e-63 247.7 627 31.6
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 8.4e-60 236.1 235 54.9
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.3e-49 201.4 125 71.2
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 4.0e-46 190.7 139 72.7
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.3e-41 174.9 96 89.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.2e-36 158.3 95 78.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.5e-35 153.7 232 41.8
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.0e-33 149.4 76 94.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.2e-31 141.7 75 90.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.4e-19 102.4 97 53.6
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 9.4e-19 99.8 86 54.7
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 4.4e-16 90.9 85 54.1
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 7.0e-14 83.6 51 78.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 5.9e-13 80.5 51 72.5


User provided reference genes

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