Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0123200 Rhododendron simsii HOM05D002321 ORTHO05D008751 3.1e-142 508.4 255 100.0
Rhsim11G0035000 Rhododendron simsii HOM05D002321 ORTHO05D007292 1.1e-14 84.7 76 64.5
Rhsim11G0035800 Rhododendron simsii HOM05D002321 ORTHO05D007292 5.5e-14 82.4 76 64.5
Rhsim11G0035400 Rhododendron simsii HOM05D002321 ORTHO05D007292 1.2e-13 81.3 76 63.2
Hma1.2p1_0199F.1_g085680 Hydrangea macrophylla HOM05D002321 ORTHO05D007292 2.1e-13 80.5 75 62.7
Hma1.2p1_0199F.1_g085690 Hydrangea macrophylla HOM05D002321 ORTHO05D007292 2.1e-13 80.5 75 62.7
vmacro00081 Vaccinium macrocarpon HOM05D002321 ORTHO05D007292 2.7e-13 80.1 76 63.2
Actinidia32784 Actinidia chinensis HOM05D002321 ORTHO05D007292 3.5e-13 79.7 75 62.7
DCAR_028365 Daucus carota HOM05D002321 ORTHO05D007292 4.6e-13 79.3 75 61.3
Dinv41810 Davidia involucrata HOM05D002321 ORTHO05D007292 7.9e-13 78.6 75 61.3
QL07p000071 Quercus lobata HOM05D002321 ORTHO05D007292 1.0e-12 78.2 75 61.3
Manes.11G092600 Manihot esculenta HOM05D002321 ORTHO05D007292 1.8e-12 77.4 75 62.7
COL.COLO4_10363 Corchorus olitorius HOM05D002321 ORTHO05D007292 2.3e-12 77.0 75 61.3
Os04g0290800 Oryza sativa ssp. japonica HOM05D002321 ORTHO05D007292 2.3e-12 77.0 75 60.0
CiPaw.03G266200 Carya illinoinensis HOM05D002321 ORTHO05D007292 3.0e-12 76.6 75 61.3
Lsat_1_v5_gn_5_56941 Lactuca sativa HOM05D002321 ORTHO05D007292 3.0e-12 76.6 75 61.3
Thecc.03G318100 Theobroma cacao HOM05D002321 ORTHO05D007292 3.0e-12 76.6 75 61.3
Aqoxy7G00905 Aquilegia oxysepala HOM05D002321 ORTHO05D007292 3.9e-12 76.3 75 61.3
Lj8A345G17 Lonicera japonica HOM05D002321 ORTHO05D007292 3.9e-12 76.3 76 59.2
Zm00001eb143370 Zea mays HOM05D002321 ORTHO05D007292 5.1e-12 75.9 76 57.9
CAN.G884.10 Capsicum annuum HOM05D002321 ORTHO05D007292 8.7e-12 75.1 75 60.0
FAN15G3131 Fragaria x ananassa HOM05D002321 ORTHO05D007292 8.7e-12 75.1 76 60.5
FAN20G1652 Fragaria x ananassa HOM05D002321 ORTHO05D007292 8.7e-12 75.1 76 60.5
HanXRQChr03g0081051 Helianthus annuus HOM05D002321 ORTHO05D007292 8.7e-12 75.1 75 60.0
Oeu015537.1 Olea europaea HOM05D002321 ORTHO05D007292 8.7e-12 75.1 75 60.0
SalBow4G2419 Salvia bowleyana HOM05D002321 ORTHO05D007292 8.7e-12 75.1 75 61.3
TWI32G0969 Tripterygium wilfordii HOM05D002321 ORTHO05D007292 8.7e-12 75.1 75 60.0
Migut.A00536 Erythranthe guttata HOM05D002321 ORTHO05D007292 1.1e-11 74.7 75 60.0
SGA_v2.0_scaffold96G29090 Striga asiatica HOM05D002321 ORTHO05D007292 1.1e-11 74.7 75 60.0
Cc08_g05450 Coffea canephora HOM05D002321 ORTHO05D007292 1.5e-11 74.3 75 58.7
TAR636G3608 Trochodendron aralioides HOM05D002321 ORTHO05D007292 1.5e-11 74.3 75 61.3
ECA240G2715 Erigeron canadensis HOM05D002321 ORTHO05D007292 1.9e-11 73.9 75 58.7
Potri.001G193300 Populus trichocarpa HOM05D002321 ORTHO05D007292 1.9e-11 73.9 75 60.0
Solyc08g005570.4 Solanum lycopersicum HOM05D002321 ORTHO05D007292 1.9e-11 73.9 75 58.7
Sopen08g001590 Solanum pennellii HOM05D002321 ORTHO05D007292 1.9e-11 73.9 75 58.7
PGSC0003DMG400018482 Solanum tuberosum HOM05D002321 ORTHO05D007292 1.9e-11 73.9 75 58.7
EL10Ac6g14606 Beta vulgaris HOM05D002321 ORTHO05D007292 2.5e-11 73.6 56 71.4
Nitab4.5_0001175g0160 Nicotiana tabacum HOM05D002321 ORTHO05D007292 2.5e-11 73.6 75 57.3
Peaxi162Scf00045g00729 Petunia axillaris HOM05D002321 ORTHO05D007292 2.5e-11 73.6 75 57.3
Prupe.1G352800 Prunus persica HOM05D002321 ORTHO05D007292 2.5e-11 73.6 75 60.0
RcHm_v2.0_Chr6g0304441 Rosa chinensis HOM05D002321 ORTHO05D007292 3.3e-11 73.2 75 58.7
TPR.G5263 Trifolium pratense HOM05D002321 ORTHO05D007292 3.3e-11 73.2 76 55.3
CSS0039841 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D007292 4.3e-11 72.8 75 60.0
Lalb_Chr16g0380301 Lupinus albus HOM05D002321 ORTHO05D007292 4.3e-11 72.8 75 57.3
Nn7g37396 Nelumbo nucifera HOM05D002321 ORTHO05D007292 4.3e-11 72.8 75 60.0
unitig_32.g11634 Utricularia gibba HOM05D002321 ORTHO05D007292 4.3e-11 72.8 75 57.3
AT3G45890 Arabidopsis thaliana HOM05D002321 ORTHO05D007292 5.7e-11 72.4 75 58.7
Cpa.g.sc54.69 Carica papaya HOM05D002321 ORTHO05D007292 5.7e-11 72.4 75 60.0
Eucgr.D02553 Eucalyptus grandis HOM05D002321 ORTHO05D007292 5.7e-11 72.4 75 60.0
Gohir.A08G149900 Gossypium hirsutum HOM05D002321 ORTHO05D007292 5.7e-11 72.4 76 57.9
Gohir.D08G171000 Gossypium hirsutum HOM05D002321 ORTHO05D007292 5.7e-11 72.4 76 57.9
Gorai.004G178400 Gossypium raimondii HOM05D002321 ORTHO05D007292 5.7e-11 72.4 76 57.9
Medtr5g025160 Medicago truncatula HOM05D002321 ORTHO05D007292 5.7e-11 72.4 75 56.0
CANSAT01G1510 Cannabis sativa HOM05D002321 ORTHO05D007292 7.4e-11 72.0 76 56.6
THA.LOC104814396 Tarenaya hassleriana HOM05D002321 ORTHO05D007292 7.4e-11 72.0 75 58.7
AL5G24570 Arabidopsis lyrata HOM05D002321 ORTHO05D007292 9.6e-11 71.6 75 58.7
Ca_25029_v3 Cicer arietinum L. HOM05D002321 ORTHO05D007292 9.6e-11 71.6 75 54.7
Lj2g0006482 Lotus japonicus HOM05D002321 ORTHO05D007292 9.6e-11 71.6 75 54.7
Psat2g145920 Pisum sativum HOM05D002321 ORTHO05D007292 9.6e-11 71.6 76 53.9
Psat6g117280 Pisum sativum HOM05D002321 ORTHO05D007292 9.6e-11 71.6 76 53.9
Sp5g15650 Schrenkiella parvula HOM05D002321 ORTHO05D007292 9.6e-11 71.6 75 58.7
BcaC01g01944 Brassica carinata HOM05D002321 ORTHO05D007292 1.3e-10 71.2 75 58.7
C03p70360 Brassica napus HOM05D002321 ORTHO05D007292 1.3e-10 71.2 75 58.7
BolC3t19290H Brassica oleracea HOM05D002321 ORTHO05D007292 1.3e-10 71.2 75 58.7
MD08G1000800 Malus domestica HOM05D002321 ORTHO05D007292 1.3e-10 71.2 75 58.7
Aa31LG9G15700 Aethionema arabicum HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
arahy.Tifrunner.gnm1.ann1.MGL5WV Arachis hypogaea HOM05D002321 ORTHO05D007292 1.6e-10 70.9 76 55.3
arahy.Tifrunner.gnm1.ann1.RTC3FZ Arachis hypogaea HOM05D002321 ORTHO05D007292 1.6e-10 70.9 76 55.3
BcaB01g01050 Brassica carinata HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
A06p21190 Brassica napus HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
BraA06t25206Z Brassica rapa HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 56.0
AUR62010476 Chenopodium quinoa HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
AUR62030420 Chenopodium quinoa HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
Thhalv10002446m.g Eutrema salsugineum HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 58.7
HPP92_011476 Vanilla planifolia HOM05D002321 ORTHO05D007292 1.6e-10 70.9 75 57.3
CARHR154220 Cardamine hirsuta HOM05D002321 ORTHO05D007292 2.1e-10 70.5 75 57.3
Atru.chr8.2639 Acer truncatum HOM05D002321 ORTHO05D007292 2.8e-10 70.1 75 57.3
Atru.chr8.2642 Acer truncatum HOM05D002321 ORTHO05D007292 2.8e-10 70.1 75 57.3
Ciclev10012148m.g Citrus clementina HOM05D002321 ORTHO05D007292 2.8e-10 70.1 75 58.7
PSO502G0020 Papaver somniferum HOM05D002321 ORTHO05D007292 2.8e-10 70.1 75 57.3
PSO675G6664 Papaver somniferum HOM05D002321 ORTHO05D007292 2.8e-10 70.1 75 57.3
ATR0568G152 Amborella trichopoda HOM05D002321 ORTHO05D007292 3.7e-10 69.7 75 56.0
Carub.0005s1174 Capsella rubella HOM05D002321 ORTHO05D007292 3.7e-10 69.7 75 57.3
Cfa020521 Carpinus fangiana HOM05D002321 ORTHO05D007292 3.7e-10 69.7 75 57.3
Haze_09515 Corylus avellana HOM05D002321 ORTHO05D007292 3.7e-10 69.7 75 57.3
PGR031G1597 Punica granatum HOM05D002321 ORTHO05D007292 4.8e-10 69.3 75 57.3
CDE02G1030 Ceratophyllum demersum HOM05D002321 ORTHO05D007292 6.3e-10 68.9 75 54.7
Glyma.01G155200 Glycine max HOM05D002321 ORTHO05D007292 6.3e-10 68.9 76 52.6
Phvul.002G120300 Phaseolus vulgaris HOM05D002321 ORTHO05D007292 6.3e-10 68.9 76 52.6
VMungo1215G0605 Vigna mungo HOM05D002321 ORTHO05D007292 6.3e-10 68.9 76 52.6
MELO3C014739.2 Cucumis melo HOM05D002321 ORTHO05D007292 8.2e-10 68.6 75 57.3
CsaV3_3G020160 Cucumis sativus L. HOM05D002321 ORTHO05D007292 8.2e-10 68.6 75 57.3
Hund11035 Selenicereus undatus HOM05D002321 ORTHO05D007292 8.2e-10 68.6 75 57.3
Sc07g0007960 Simmondsia chinensis HOM05D002321 ORTHO05D007292 8.2e-10 68.6 75 56.0
GSVIVG01020479001 Vitis vinifera HOM05D002321 ORTHO05D007292 1.1e-09 68.2 75 56.0
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 5.3e-09 65.9 76 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4091 Anthoceros agrestis HOM05D002321 ORTHO05D007292 6.9e-09 65.5 75 52.0
MSTRG.11875 Avicennia marina HOM05D002321 ORTHO05D007292 1.2e-08 64.7 68 58.8
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.2e-08 64.7 82 43.9
EL10Ac6g14612 Beta vulgaris HOM05D002321 ORTHO05D007292 1.5e-08 64.3 75 53.3
Glyma.11G089500 Glycine max HOM05D002321 ORTHO05D007292 3.4e-08 63.2 75 50.7
Mapoly0141s0001 Marchantia polymorpha HOM05D002321 ORTHO05D007292 4.5e-08 62.8 76 48.7
Pp3c18_1720 Physcomitrium patens HOM05D002321 ORTHO05D007292 4.5e-08 62.8 75 50.7
Pp3c18_1727 Physcomitrium patens HOM05D002321 ORTHO05D007292 4.5e-08 62.8 75 50.7
Duzib068G1479 Durio zibethinus HOM05D002321 ORTHO05D007292 1.0e-07 61.6 68 55.9
FvH4_2g37260 Fragaria vesca HOM05D002321 ORTHO05D007292 1.0e-07 61.6 69 56.5
Sed0019153 Sechium edule HOM05D002321 ORTHO05D007292 1.3e-07 61.2 42 78.6
SMO118G0437 Selaginella moellendorffii HOM05D002321 ORTHO05D007292 1.7e-07 60.8 75 48.0
RhsimUnG0054900 Rhododendron simsii HOM05D000247 ORTHO05D000288 2.9e-07 60.1 45 71.1
CBR_g16803 Chara braunii HOM05D002321 ORTHO05D007292 1.9e-06 57.4 75 44.0
CBR_g34162 Chara braunii HOM05D002321 ORTHO05D007292 1.9e-06 57.4 75 44.0
CSS0026909 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D007292 2.5e-06 57.0 60 60.0
ClCG05G012210 Citrullus lanatus HOM05D002321 ORTHO05D007292 3.2e-06 56.6 40 75.0
Sabra01G0135600 Salix brachista HOM05D002321 ORTHO05D007292 3.2e-06 56.6 39 74.4
SHI07850 Sapria himalayana HOM05D002321 ORTHO05D007292 7.2e-06 55.5 100 39.0


User provided reference genes

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