Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0109900 Rhododendron simsii HOM05D000663 ORTHO05D043708 1.1e-89 333.2 161 100.0
vmacro17877 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 3.5e-35 152.1 138 65.9
Actinidia30990 Actinidia chinensis HOM05D000663 ORTHO05D003046 3.7e-16 89.0 55 78.2
Actinidia19141 Actinidia chinensis HOM05D000663 ORTHO05D003046 2.4e-15 86.3 56 78.6
Dinv26781 Davidia involucrata HOM05D000663 ORTHO05D003046 5.3e-15 85.1 96 52.1
Sc03g0001120 Simmondsia chinensis HOM05D000663 ORTHO05D003046 1.2e-14 84.0 95 49.5
AUR62027246 Chenopodium quinoa HOM05D000663 ORTHO05D003046 2.6e-14 82.8 65 64.6
SalBow1G5966 Salvia bowleyana HOM05D000663 ORTHO05D003046 3.4e-14 82.4 56 69.6
AUR62003228 Chenopodium quinoa HOM05D000663 ORTHO05D003046 7.7e-14 81.3 99 51.5
CSS0019577 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 1.0e-13 80.9 96 52.1
CSS0019667 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 1.0e-13 80.9 96 52.1
EL10Ac6g14854 Beta vulgaris HOM05D000663 ORTHO05D003046 1.7e-13 80.1 98 51.0
Cc07_g05340 Coffea canephora HOM05D000663 ORTHO05D003046 1.7e-13 80.1 96 49.0
MSTRG.2925 Avicennia marina HOM05D000663 ORTHO05D003046 2.2e-13 79.7 96 46.9
Nitab4.5_0000108g0120 Nicotiana tabacum HOM05D000663 ORTHO05D003046 1.1e-12 77.4 90 52.2
Nitab4.5_0003580g0060 Nicotiana tabacum HOM05D000663 ORTHO05D003046 1.1e-12 77.4 90 52.2
Sc16g0001230 Simmondsia chinensis HOM05D000663 ORTHO05D003046 1.4e-12 77.0 95 46.3
Peaxi162Scf00684g00560 Petunia axillaris HOM05D000663 ORTHO05D003046 2.5e-12 76.3 75 50.7
Oeu032912.1 Olea europaea HOM05D000663 ORTHO05D003046 3.2e-12 75.9 55 61.8
Migut.H00508 Erythranthe guttata HOM05D000663 ORTHO05D003046 5.5e-12 75.1 90 42.2
GSVIVG01031895001 Vitis vinifera HOM05D000663 ORTHO05D003046 1.2e-11 73.9 75 49.3
VMungo1127G0178 Vigna mungo HOM05D000663 ORTHO05D003046 1.6e-11 73.6 75 50.7
GSVIVG01003767001 Vitis vinifera HOM05D000663 ORTHO05D003046 2.1e-11 73.2 101 45.5
Duzib264G0513 Durio zibethinus HOM05D000663 ORTHO05D003046 2.7e-11 72.8 61 55.7
SGA_v2.0_scaffold15G07194 Striga asiatica HOM05D000663 ORTHO05D003046 3.6e-11 72.4 111 40.5
ClCG09G017920 Citrullus lanatus HOM05D000663 ORTHO05D003046 4.7e-11 72.0 56 62.5
Dinv23569 Davidia involucrata HOM05D000663 ORTHO05D003046 4.7e-11 72.0 85 49.4
Dinv42101 Davidia involucrata HOM05D000663 ORTHO05D003046 4.7e-11 72.0 56 64.3
Glyma.11G122200 Glycine max HOM05D000663 ORTHO05D003046 4.7e-11 72.0 56 66.1
HanXRQChr12g0378441 Helianthus annuus HOM05D000663 ORTHO05D003046 4.7e-11 72.0 91 47.3
Lj3g0009223 Lotus japonicus HOM05D000663 ORTHO05D003046 4.7e-11 72.0 114 41.2
PGR042G1246 Punica granatum HOM05D000663 ORTHO05D003046 4.7e-11 72.0 85 49.4
Cfa004965 Carpinus fangiana HOM05D000663 ORTHO05D003046 6.1e-11 71.6 55 61.8
FvH4_2g07710 Fragaria vesca HOM05D000663 ORTHO05D003046 6.1e-11 71.6 56 58.9
HanXRQChr09g0264361 Helianthus annuus HOM05D000663 ORTHO05D003046 6.1e-11 71.6 95 44.2
Medtr4g068780 Medicago truncatula HOM05D000663 ORTHO05D003046 6.1e-11 71.6 99 44.4
Oeu043826.1 Olea europaea HOM05D000663 ORTHO05D003046 6.1e-11 71.6 77 46.8
Actinidia27918 Actinidia chinensis HOM05D000663 ORTHO05D003046 8.0e-11 71.2 62 56.5
arahy.Tifrunner.gnm1.ann1.L8FFLZ Arachis hypogaea HOM05D000663 ORTHO05D003046 1.0e-10 70.9 56 64.3
arahy.Tifrunner.gnm1.ann1.R6Y0SS Arachis hypogaea HOM05D000663 ORTHO05D003046 1.0e-10 70.9 56 64.3
Peaxi162Scf00016g01134 Petunia axillaris HOM05D000663 ORTHO05D003046 1.0e-10 70.9 62 53.2
vmacro19446 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 1.0e-10 70.9 56 62.5
vmacro23388 Vaccinium macrocarpon HOM05D000663 ORTHO05D003046 1.0e-10 70.9 56 62.5
Lsat_1_v5_gn_4_179181 Lactuca sativa HOM05D000663 ORTHO05D003046 1.4e-10 70.5 95 43.2
QL11p039606 Quercus lobata HOM05D000663 ORTHO05D003046 1.4e-10 70.5 56 62.5
Rhsim05G0078000 Rhododendron simsii HOM05D000663 ORTHO05D003046 1.4e-10 70.5 56 60.7
Sed0019769 Sechium edule HOM05D000663 ORTHO05D003046 1.4e-10 70.5 58 56.9
Atru.chr5.2908 Acer truncatum HOM05D000663 ORTHO05D003046 1.8e-10 70.1 56 62.5
COL.COLO4_22172 Corchorus olitorius HOM05D000663 ORTHO05D003046 1.8e-10 70.1 61 54.1
Gohir.A11G188000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 1.8e-10 70.1 61 55.7
Gohir.D11G194500 Gossypium hirsutum HOM05D000663 ORTHO05D003046 1.8e-10 70.1 61 55.7
Gorai.007G207900 Gossypium raimondii HOM05D000663 ORTHO05D003046 1.8e-10 70.1 61 55.7
Lj7C14G9 Lonicera japonica HOM05D000663 ORTHO05D003046 1.8e-10 70.1 95 43.2
MD10G1084900 Malus domestica HOM05D000663 ORTHO05D003046 1.8e-10 70.1 56 60.7
Haze_02437 Corylus avellana HOM05D000663 ORTHO05D003046 2.3e-10 69.7 55 60.0
Os03g0767900 Oryza sativa ssp. japonica HOM05D000663 ORTHO05D003046 2.3e-10 69.7 55 58.2
Phvul.011G049100 Phaseolus vulgaris HOM05D000663 ORTHO05D003046 2.3e-10 69.7 56 64.3
Prupe.8G107800 Prunus persica HOM05D000663 ORTHO05D003046 2.3e-10 69.7 56 60.7
MELO3C021960.2 Cucumis melo HOM05D000663 ORTHO05D003046 3.0e-10 69.3 95 44.2
CsaV3_2G014530 Cucumis sativus L. HOM05D000663 ORTHO05D003046 3.0e-10 69.3 95 44.2
Gohir.D06G092600 Gossypium hirsutum HOM05D000663 ORTHO05D003046 3.0e-10 69.3 90 50.0
TAR381G1418 Trochodendron aralioides HOM05D000663 ORTHO05D003046 3.0e-10 69.3 90 47.8
Ciclev10029477m.g Citrus clementina HOM05D000663 ORTHO05D003046 3.9e-10 68.9 95 47.4
FAN15G1372 Fragaria x ananassa HOM05D000663 ORTHO05D003046 3.9e-10 68.9 56 57.1
FAN20G0225 Fragaria x ananassa HOM05D000663 ORTHO05D003046 3.9e-10 68.9 56 57.1
FAN24G1147 Fragaria x ananassa HOM05D000025 ORTHO05D000040 3.9e-10 68.9 56 57.1
Hma1.2p1_0584F.1_g183360 Hydrangea macrophylla HOM05D000663 ORTHO05D003046 3.9e-10 68.9 61 55.7
PSO541G5941 Papaver somniferum HOM05D000663 ORTHO05D003046 3.9e-10 68.9 62 48.4
RcHm_v2.0_Chr6g0262031 Rosa chinensis HOM05D000663 ORTHO05D003046 3.9e-10 68.9 56 57.1
DCAR_025666 Daucus carota HOM05D000663 ORTHO05D003046 5.2e-10 68.6 51 62.7
ECA232G4605 Erigeron canadensis HOM05D000663 ORTHO05D003046 5.2e-10 68.6 95 42.1
Glyma.12G047000 Glycine max HOM05D000663 ORTHO05D003046 5.2e-10 68.6 98 48.0
Nn6g32179 Nelumbo nucifera HOM05D000663 ORTHO05D003046 5.2e-10 68.6 99 42.4
Potri.009G110200 Populus trichocarpa HOM05D000663 ORTHO05D003046 5.2e-10 68.6 56 60.7
Sabra09G0084200 Salix brachista HOM05D000663 ORTHO05D003046 5.2e-10 68.6 56 60.7
MSTRG.23809 Avicennia marina HOM05D000663 ORTHO05D003046 6.7e-10 68.2 57 59.6
CiPaw.05G059600 Carya illinoinensis HOM05D000663 ORTHO05D003046 6.7e-10 68.2 58 58.6
Nitab4.5_0003281g0030 Nicotiana tabacum HOM05D000663 ORTHO05D003046 6.7e-10 68.2 61 50.8
Hund16567 Selenicereus undatus HOM05D000663 ORTHO05D003046 6.7e-10 68.2 51 64.7
Gohir.D05G346200 Gossypium hirsutum HOM05D000663 ORTHO05D003046 8.8e-10 67.8 61 54.1
Lj5A203G55 Lonicera japonica HOM05D000663 ORTHO05D003046 8.8e-10 67.8 76 53.9
Lalb_Chr01g0002881 Lupinus albus HOM05D000663 ORTHO05D003046 8.8e-10 67.8 56 62.5
Manes.12G097100 Manihot esculenta HOM05D000663 ORTHO05D003046 8.8e-10 67.8 75 45.3
TPR.G29892 Trifolium pratense HOM05D000663 ORTHO05D003046 8.8e-10 67.8 99 44.4
Duzib132G0384 Durio zibethinus HOM05D000663 ORTHO05D003046 1.1e-09 67.4 79 48.1
Gorai.011G103200 Gossypium raimondii HOM05D000663 ORTHO05D003046 1.1e-09 67.4 52 57.7
Gohir.D10G094100 Gossypium hirsutum HOM05D000663 ORTHO05D003046 1.5e-09 67.0 61 50.8
Gorai.009G408600 Gossypium raimondii HOM05D000663 ORTHO05D003046 1.5e-09 67.0 79 49.4
Lsat_1_v5_gn_3_93761 Lactuca sativa HOM05D000663 ORTHO05D003046 1.5e-09 67.0 84 44.0
MBI16_g13166_MAGBIO Magnolia biondii HOM05D000663 ORTHO05D003046 1.5e-09 67.0 91 44.0
Peaxi162Scf00535g00527 Petunia axillaris HOM05D000663 ORTHO05D003046 1.5e-09 67.0 80 48.8
Hund14122 Selenicereus undatus HOM05D000663 ORTHO05D003046 1.5e-09 67.0 55 56.4
Thecc.02G030200 Theobroma cacao HOM05D000663 ORTHO05D003046 1.5e-09 67.0 56 58.9
Cc02_g18080 Coffea canephora HOM05D000663 ORTHO05D003046 2.0e-09 66.6 73 45.2
Manes.13G132800 Manihot esculenta HOM05D000663 ORTHO05D003046 2.0e-09 66.6 113 37.2
Manes.17G097800 Manihot esculenta HOM05D000663 ORTHO05D003046 2.0e-09 66.6 56 57.1
PSO700G0388 Papaver somniferum HOM05D000663 ORTHO05D003046 2.6e-09 66.2 56 53.6
Zm00001eb058720 Zea mays HOM05D000663 ORTHO05D003046 2.6e-09 66.2 56 62.5
CDE01G0293 Ceratophyllum demersum HOM05D000663 ORTHO05D003046 3.3e-09 65.9 62 46.8
COL.COLO4_17789 Corchorus olitorius HOM05D000663 ORTHO05D003046 3.3e-09 65.9 80 50.0
Duzib187G0410 Durio zibethinus HOM05D000663 ORTHO05D003046 3.3e-09 65.9 96 40.6
Potri.004G149332 Populus trichocarpa HOM05D000663 ORTHO05D003046 3.3e-09 65.9 80 50.0
Eucgr.I01232 Eucalyptus grandis HOM05D000663 ORTHO05D003046 4.4e-09 65.5 55 60.0
Gohir.A10G094000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 4.4e-09 65.5 61 49.2
Lsat_1_v5_gn_7_88660 Lactuca sativa HOM05D000663 ORTHO05D003046 4.4e-09 65.5 67 50.7
Nn5g29448 Nelumbo nucifera HOM05D000663 ORTHO05D003046 4.4e-09 65.5 85 42.4
Thecc.01G045200 Theobroma cacao HOM05D000663 ORTHO05D003046 4.4e-09 65.5 104 45.2
Solyc02g065420.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 5.7e-09 65.1 90 38.9
Solyc02g090000.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 7.4e-09 64.7 56 51.8
Sopen02g034690 Solanum pennellii HOM05D000663 ORTHO05D003046 7.4e-09 64.7 56 51.8
HanXRQChr02g0035551 Helianthus annuus HOM05D000663 ORTHO05D003046 9.7e-09 64.3 94 40.4
Sopen02g015620 Solanum pennellii HOM05D000663 ORTHO05D003046 9.7e-09 64.3 90 38.9
PGSC0003DMG400010037 Solanum tuberosum HOM05D000663 ORTHO05D003046 9.7e-09 64.3 56 51.8
CiPaw.06G138600 Carya illinoinensis HOM05D000663 ORTHO05D003046 1.3e-08 63.9 82 46.3
PSO170G2038 Papaver somniferum HOM05D000663 ORTHO05D003046 1.3e-08 63.9 57 50.9
unitig_899.g15142 Utricularia gibba HOM05D000663 ORTHO05D003046 1.3e-08 63.9 61 49.2
Gorai.010G106900 Gossypium raimondii HOM05D000663 ORTHO05D003046 1.7e-08 63.5 55 60.0
TWI79G1154 Tripterygium wilfordii HOM05D000663 ORTHO05D003046 2.2e-08 63.2 85 43.5
HanXRQChr16g0506131 Helianthus annuus HOM05D000663 ORTHO05D003046 2.8e-08 62.8 60 48.3
MSTRG.5384 Avicennia marina HOM05D000663 ORTHO05D003046 3.7e-08 62.4 95 37.9
CiPaw.02G013500 Carya illinoinensis HOM05D000663 ORTHO05D003046 3.7e-08 62.4 80 40.0
CDE02G1378 Ceratophyllum demersum HOM05D000663 ORTHO05D003046 3.7e-08 62.4 62 43.5
Manes.15G146600 Manihot esculenta HOM05D000663 ORTHO05D003046 3.7e-08 62.4 56 51.8
PSO675G7740 Papaver somniferum HOM05D000663 ORTHO05D003046 3.7e-08 62.4 62 43.5
PSO675G8220 Papaver somniferum HOM05D000663 ORTHO05D003046 3.7e-08 62.4 62 43.5
QL06p044322 Quercus lobata HOM05D000663 ORTHO05D003046 3.7e-08 62.4 60 53.3
Gohir.D01G172400 Gossypium hirsutum HOM05D000663 ORTHO05D003046 4.8e-08 62.0 56 53.6
Gorai.002G214000 Gossypium raimondii HOM05D000663 ORTHO05D003046 4.8e-08 62.0 56 53.6
CSS0002650 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D113323 1.1e-07 60.8 46 60.9
CANSAT01G1081 Cannabis sativa HOM05D000663 ORTHO05D003046 1.1e-07 60.8 56 51.8
Migut.K00844 Erythranthe guttata HOM05D000663 ORTHO05D003046 1.1e-07 60.8 90 38.9
Ciclev10026699m.g Citrus clementina HOM05D000663 ORTHO05D003046 1.4e-07 60.5 90 42.2
Gohir.A01G181300 Gossypium hirsutum HOM05D000663 ORTHO05D003046 1.8e-07 60.1 56 51.8
THA.LOC104807996 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 1.8e-07 60.1 51 56.9
THA.LOC104821284 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 1.8e-07 60.1 51 56.9
Haze_15160 Corylus avellana HOM05D000663 ORTHO05D003046 3.1e-07 59.3 55 52.7
TAR628G0318 Trochodendron aralioides HOM05D000663 ORTHO05D003046 3.1e-07 59.3 119 36.1
AT4G37235 Arabidopsis thaliana HOM05D000663 ORTHO05D003046 4.1e-07 58.9 56 50.0
ECA246G2035 Erigeron canadensis HOM05D000091 ORTHO05D006279 4.1e-07 58.9 96 39.6
PGSC0003DMG400002781 Solanum tuberosum HOM05D000663 ORTHO05D003046 4.1e-07 58.9 101 37.6
Aqoxy5G01739 Aquilegia oxysepala HOM05D000663 ORTHO05D003046 5.3e-07 58.5 56 51.8
Cfa004237 Carpinus fangiana HOM05D000001 ORTHO05D043708 5.3e-07 58.5 49 57.1
ECA236G3327 Erigeron canadensis HOM05D000663 ORTHO05D000001 5.3e-07 58.5 79 43.0
Oeu028949.2 Olea europaea HOM05D000663 ORTHO05D003046 5.3e-07 58.5 55 52.7
Sabra07G0029300 Salix brachista HOM05D000663 ORTHO05D003046 5.3e-07 58.5 116 35.3
THA.LOC104807565 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 5.3e-07 58.5 45 66.7
BcaNung03517 Brassica carinata HOM05D000663 ORTHO05D003046 7.0e-07 58.2 51 54.9
Carub.0007s0342 Capsella rubella HOM05D000663 ORTHO05D003046 7.0e-07 58.2 51 54.9
ClCG01G016360 Citrullus lanatus HOM05D000663 ORTHO05D003046 7.0e-07 58.2 92 44.6
CsaV3_6G042670 Cucumis sativus L. HOM05D000663 ORTHO05D003046 7.0e-07 58.2 92 44.6
GSVIVG01016469001 Vitis vinifera HOM05D000663 ORTHO05D000834 7.0e-07 58.2 98 36.7
AL7G14040 Arabidopsis lyrata HOM05D000663 ORTHO05D003046 1.2e-06 57.4 51 52.9
Sed0016398 Sechium edule HOM05D000663 ORTHO05D003046 1.2e-06 57.4 92 42.4
Hund00295 Selenicereus undatus HOM05D000663 ORTHO05D003046 1.2e-06 57.4 55 41.8
Hund00302 Selenicereus undatus HOM05D000663 ORTHO05D003046 1.2e-06 57.4 55 41.8
THA.LOC104826708 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 1.2e-06 57.4 107 35.5
AT1G49405 Arabidopsis thaliana HOM05D000663 ORTHO05D003046 1.6e-06 57.0 95 35.8
Oeu034078.2 Olea europaea HOM05D000663 ORTHO05D003046 1.6e-06 57.0 95 37.9
Aa31LG10G4580 Aethionema arabicum HOM05D000663 ORTHO05D003046 2.0e-06 56.6 95 36.8
BcaC02g12250 Brassica carinata HOM05D000663 ORTHO05D003046 2.0e-06 56.6 51 54.9
C01p02200 Brassica napus HOM05D000663 ORTHO05D003046 2.0e-06 56.6 51 54.9
BolC1t00212H Brassica oleracea HOM05D000663 ORTHO05D003046 2.0e-06 56.6 51 54.9
MELO3C007506.2 Cucumis melo HOM05D000663 ORTHO05D003046 2.0e-06 56.6 81 46.9
Thhalv10011847m.g Eutrema salsugineum HOM05D000663 ORTHO05D003046 2.0e-06 56.6 95 35.8
MD02G1157700 Malus domestica HOM05D000663 ORTHO05D003046 2.0e-06 56.6 97 42.3
Prupe.7G146000 Prunus persica HOM05D000663 ORTHO05D003046 2.0e-06 56.6 75 36.0
CARHR039410 Cardamine hirsuta HOM05D000663 ORTHO05D003046 2.6e-06 56.2 62 41.9
MD15G1272400 Malus domestica HOM05D000663 ORTHO05D003046 2.6e-06 56.2 92 42.4
Sp1g36250 Schrenkiella parvula HOM05D000663 ORTHO05D003046 3.5e-06 55.8 95 34.7
Sp7g34550 Schrenkiella parvula HOM05D000663 ORTHO05D003046 3.5e-06 55.8 51 49.0
AL1G56560 Arabidopsis lyrata HOM05D000663 ORTHO05D003046 4.5e-06 55.5 95 34.7
A01p02020 Brassica napus HOM05D000663 ORTHO05D003046 4.5e-06 55.5 51 52.9
BraA01t00190Z Brassica rapa HOM05D000663 ORTHO05D003046 4.5e-06 55.5 51 52.9
Thhalv10026476m.g Eutrema salsugineum HOM05D000663 ORTHO05D003046 4.5e-06 55.5 51 54.9
Nitab4.5_0000090g0110 Nicotiana tabacum HOM05D000663 ORTHO05D003046 4.5e-06 55.5 56 48.2
Nitab4.5_0009967g0040 Nicotiana tabacum HOM05D000663 ORTHO05D003046 4.5e-06 55.5 91 39.6
BcaB04g17344 Brassica carinata HOM05D000663 ORTHO05D003046 5.9e-06 55.1 95 34.7
BcaC07g37056 Brassica carinata HOM05D000663 ORTHO05D003046 5.9e-06 55.1 95 34.7
BolC8t47224H Brassica oleracea HOM05D000663 ORTHO05D003046 5.9e-06 55.1 95 34.7
A08p04000 Brassica napus HOM05D000663 ORTHO05D003046 7.7e-06 54.7 95 34.7
BraA08t32428Z Brassica rapa HOM05D000663 ORTHO05D003046 7.7e-06 54.7 95 34.7
FAN23G2141 Fragaria x ananassa HOM05D000663 ORTHO05D003046 7.7e-06 54.7 57 45.6


User provided reference genes

Program Settings