Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.1e-245 850.5 470 100.0
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 5.7e-150 535.0 570 59.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.1e-145 520.8 499 65.1
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.6e-144 516.9 502 64.7
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 7.7e-139 498.0 498 63.9
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 5.5e-137 491.9 497 62.0
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.0e-135 486.1 496 65.7
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.0e-130 471.1 590 54.7
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.5e-129 467.2 505 60.4
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.1e-124 449.5 493 58.8
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.3e-124 448.7 495 58.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.2e-123 447.6 496 58.3
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 8.5e-122 441.4 491 60.1
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.1e-121 441.0 492 57.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.5e-121 439.9 494 58.1
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 5.5e-121 438.7 483 59.4
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 6.1e-120 435.3 483 61.7
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.3e-119 433.3 500 61.0
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 3.0e-119 433.0 496 57.1
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 7.5e-118 428.3 504 56.7
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.8e-116 423.7 475 60.6
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.9e-114 416.4 495 60.0
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 3.8e-114 416.0 486 59.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 8.6e-114 414.8 478 54.8
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 8.6e-114 414.8 497 55.7
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.6e-112 409.5 473 57.1
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 8.0e-112 408.3 484 58.3
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.3e-111 406.8 498 53.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.5e-110 404.1 479 60.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.5e-110 404.1 479 60.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.0e-110 403.7 488 54.7
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.6e-110 403.3 495 54.3
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 3.4e-110 402.9 449 56.3
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 7.5e-110 401.7 462 57.1
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.7e-109 400.6 503 56.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.8e-109 399.8 499 56.5
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.1e-108 397.9 482 56.4
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.8e-108 397.1 489 53.4
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.4e-108 396.7 489 53.6
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.5e-107 392.5 486 57.4
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.0e-106 391.3 486 57.2
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.3e-106 391.0 495 52.7
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.9e-106 389.4 499 51.7
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.6e-106 388.7 483 53.6
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.9e-105 387.1 482 55.4
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.5e-105 386.7 472 53.6
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.5e-105 386.7 485 56.7
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 3.3e-105 386.3 486 54.3
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.2e-104 384.4 499 55.3
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.2e-104 384.4 495 52.7
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.7e-104 382.5 488 56.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.7e-104 382.5 494 54.3
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.0e-103 379.4 493 55.6
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.2e-103 379.0 441 59.2
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-102 377.5 484 55.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.6e-102 376.7 488 56.6
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.8e-102 375.6 493 51.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.3e-101 374.4 492 52.0
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.7e-101 374.0 481 50.5
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.9e-101 373.2 486 52.7
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.1e-100 371.3 517 51.3
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 3.2e-100 369.8 494 54.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.2e-100 369.8 484 51.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.1e-100 369.4 493 50.7
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 7.0e-100 368.6 498 50.2
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.6e-99 367.5 485 53.4
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.7e-99 366.7 469 53.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 7.8e-99 365.2 489 55.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.0e-98 364.8 465 52.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.3e-98 363.6 472 55.5
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.0e-98 362.5 496 51.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 6.6e-98 362.1 474 55.5
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.1e-97 361.3 495 52.9
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 7.3e-97 358.6 469 57.4
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.2e-96 357.8 497 52.5
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.6e-96 357.5 494 50.6
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 4.7e-96 355.9 447 54.6
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 8.0e-96 355.1 495 51.7
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.1e-95 354.8 491 52.5
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.4e-95 354.4 449 53.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.3e-95 353.6 465 50.8
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 5.2e-95 352.4 454 52.9
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.0e-94 350.5 374 63.4
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 4.4e-94 349.4 488 51.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 9.8e-94 348.2 503 49.3
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 8.3e-93 345.1 490 51.0
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.4e-92 344.4 489 48.1
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.9e-92 344.0 494 51.6
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 9.2e-92 341.7 484 52.1
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.2e-91 341.3 493 48.1
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 4.6e-91 339.3 502 48.0
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.8e-91 338.6 470 52.8
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.7e-90 337.4 485 51.5
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 3.9e-90 336.3 418 56.2
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 6.6e-90 335.5 500 52.6
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 8.6e-90 335.1 410 52.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-89 334.7 494 49.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.5e-89 333.6 499 49.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 9.5e-89 331.6 487 50.9
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.1e-88 330.5 350 63.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.8e-87 327.4 510 47.6
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 5.2e-87 325.9 460 51.5
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 7.5e-86 322.0 496 48.4
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 2.9e-85 320.1 452 52.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 7.1e-84 315.5 489 46.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.1e-83 313.9 463 51.8
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 5.6e-81 305.8 466 48.9
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-79 301.6 453 50.1
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.8e-79 298.9 488 45.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.2e-77 293.9 494 43.9
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 8.4e-77 292.0 550 41.5
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 8.4e-77 292.0 470 44.3
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.6e-74 282.3 466 46.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.6e-72 277.7 260 67.7
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.1e-72 277.3 466 46.4
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-71 274.2 452 48.2
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.2e-70 271.6 284 62.3
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.2e-69 267.3 289 58.5
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.2e-69 267.3 476 41.2
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 8.4e-69 265.4 390 48.7
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.9e-66 256.5 291 59.1
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 9.6e-65 251.9 363 50.7
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.8e-64 250.4 431 43.4
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 4.0e-63 246.5 458 41.9
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.4e-55 221.5 453 37.3
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.5e-54 218.0 270 56.3
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.1e-52 211.8 409 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.7e-43 180.6 406 33.0
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 9.7e-41 172.2 474 32.7
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.5e-37 159.5 284 44.0
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 5.1e-34 149.8 443 34.3
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 3.3e-25 120.6 161 47.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 2.2e-24 117.9 92 67.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 8.2e-24 115.9 165 47.9
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 4.1e-23 113.6 444 29.1
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.1e-23 112.5 67 77.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.5e-22 110.2 231 39.0
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.9e-21 107.5 75 70.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.5e-17 95.1 398 30.2
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-16 91.7 107 52.3
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.7e-16 91.7 208 38.5
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.2e-16 91.3 289 29.8
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.8e-16 90.9 127 44.9
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.6e-14 85.1 199 37.7
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.6e-14 84.3 261 29.9
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 4.5e-14 83.6 218 39.0
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.0e-13 80.1 180 40.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 7.2e-12 76.3 194 36.1
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 3.0e-10 70.9 142 44.4
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.4e-09 67.4 206 34.5
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.7e-08 65.1 305 26.6
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 6.3e-08 63.2 73 54.8
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.3e-08 63.2 70 47.1
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.4e-07 61.2 167 31.7
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.7e-06 57.8 114 36.8
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 5.9e-06 56.6 206 32.5


User provided reference genes

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