Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.6e-160 569.3 282 100.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.8e-136 488.0 241 100.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.2e-128 461.1 240 93.8
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.4e-127 459.9 239 94.1
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.8e-120 435.6 238 89.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-119 431.8 238 88.2
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.3e-117 426.8 238 87.8
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.8e-114 416.4 238 84.5
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.0e-113 412.9 238 84.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.3e-113 411.8 276 74.3
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.1e-111 405.2 274 74.5
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.9e-111 404.4 239 81.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-110 403.7 274 74.1
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.2e-110 403.7 230 84.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.2e-110 403.7 238 81.5
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.4e-110 402.1 238 82.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 4.5e-110 401.7 238 84.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.9e-110 401.4 242 80.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.9e-110 401.4 230 84.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.7e-109 399.8 230 83.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.7e-109 399.8 238 81.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-109 399.4 230 83.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.2e-109 399.4 240 81.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.2e-109 399.4 235 83.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.8e-109 398.7 230 82.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.0e-109 398.3 230 83.0
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.0e-109 398.3 247 79.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.5e-109 397.9 232 85.8
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 8.5e-109 397.5 228 83.3
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 8.5e-109 397.5 230 84.8
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.4e-108 396.7 228 83.8
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.4e-108 396.7 228 84.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.4e-108 396.7 234 82.1
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.4e-108 396.7 242 80.6
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.9e-108 396.4 236 81.4
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.9e-108 396.4 238 81.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.2e-108 395.2 260 77.3
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.5e-108 394.8 228 82.9
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.5e-108 394.8 238 80.3
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.2e-108 394.4 233 80.7
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.2e-108 394.4 233 80.7
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 9.4e-108 394.0 228 82.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 9.4e-108 394.0 230 82.2
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 9.4e-108 394.0 227 83.3
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 9.4e-108 394.0 228 83.3
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.1e-107 392.9 236 79.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.1e-107 392.9 230 82.2
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 4.7e-107 391.7 238 79.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.4e-106 390.2 234 79.9
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.0e-106 389.0 238 79.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.9e-106 388.7 234 81.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.8e-106 387.5 234 79.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 4.4e-105 385.2 243 76.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 9.7e-105 384.0 243 75.7
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 9.7e-105 384.0 228 80.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.3e-104 383.6 234 79.5
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.7e-104 383.3 247 77.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.8e-104 382.5 235 78.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.8e-104 382.5 239 77.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.1e-103 380.6 243 75.7
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 7.0e-103 377.9 236 78.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 9.1e-103 377.5 233 78.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-102 376.7 238 77.7
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.6e-102 375.9 230 80.4
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.7e-101 373.2 230 79.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.2e-101 372.9 231 79.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-101 372.9 256 73.8
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 8.5e-101 370.9 230 79.6
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.9e-100 369.8 228 80.7
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.2e-99 367.1 249 71.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-99 366.7 226 80.1
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.1e-99 364.8 239 77.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.1e-99 364.8 229 79.5
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.3e-98 362.8 228 78.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.3e-98 362.8 228 78.1
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.0e-98 362.5 250 68.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.0e-98 362.1 235 76.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 4.0e-98 362.1 228 78.1
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 5.2e-98 361.7 199 86.9
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.2e-98 361.7 244 71.7
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 6.7e-98 361.3 236 76.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.7e-98 361.3 226 77.9
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 8.8e-98 360.9 236 74.2
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.1e-97 360.5 229 77.7
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.5e-97 360.1 230 76.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.5e-97 360.1 248 71.0
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.0e-97 359.8 228 77.6
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.6e-97 359.4 235 75.7
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 9.7e-97 357.5 234 75.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-96 357.1 230 76.5
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.7e-96 356.7 234 76.1
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.7e-96 355.5 236 74.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 6.3e-96 354.8 233 76.0
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.3e-96 354.8 234 74.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 8.2e-96 354.4 235 74.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 8.2e-96 354.4 235 74.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 8.2e-96 354.4 243 71.6
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.4e-95 353.6 250 68.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-95 353.2 236 74.6
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.8e-95 353.2 236 74.6
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.1e-95 352.4 229 76.0
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 5.9e-94 348.2 230 74.8
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.0e-93 347.4 246 69.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 5.0e-93 345.1 241 71.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.4e-92 340.9 242 74.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-91 340.5 233 73.8
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.0e-90 337.4 196 84.2
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.3e-90 336.3 242 73.6
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 7.5e-89 331.3 227 73.1
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.7e-86 322.8 234 69.7
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-85 319.7 199 75.4
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-84 317.4 267 64.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.9e-84 316.6 185 82.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.5e-84 316.2 211 74.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 7.5e-81 304.7 221 69.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.1e-79 300.8 221 67.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 2.4e-79 299.7 235 66.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.6e-78 297.0 166 85.5
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.7e-78 296.2 230 65.7
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.6e-77 291.6 215 71.6
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-71 274.2 226 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.5e-68 263.8 242 57.4
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 9.5e-68 261.2 215 58.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.2e-63 246.1 151 80.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.0e-58 229.2 174 66.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.3e-53 213.4 225 50.7
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.3e-52 208.4 175 65.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.4e-49 199.5 223 48.0
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 6.4e-48 195.3 197 55.3
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 6.2e-43 178.7 148 59.5
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.1e-42 177.9 124 65.3
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.2e-41 174.5 124 65.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.2e-40 170.2 230 43.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.8e-40 169.5 105 75.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 8.4e-40 168.3 258 39.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-39 166.8 96 84.4
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.6e-38 162.5 204 47.5
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-35 154.5 205 47.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 9.9e-33 144.8 92 69.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.0e-29 134.8 117 57.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.1e-29 132.5 67 95.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 4.5e-25 119.4 125 56.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.1e-18 98.2 58 79.3
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.8e-13 80.9 46 82.6
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 4.1e-10 69.7 68 50.0
vmacro11217 Vaccinium macrocarpon HOM05D004406 ORTHO05D426987 1.7e-08 64.3 94 44.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 3.2e-07 60.1 39 74.4


User provided reference genes

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