Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.2e-171 605.5 299 100.0
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.4e-164 581.3 288 100.0
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 8.7e-104 380.9 299 68.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 6.9e-93 344.7 299 61.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 9.0e-93 344.4 299 62.5
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.2e-92 344.0 299 61.5
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.2e-91 339.7 299 61.5
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.5e-91 338.2 299 61.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.2e-90 335.9 299 59.2
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 5.5e-90 335.1 299 60.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 7.2e-90 334.7 299 59.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.6e-89 333.6 299 58.5
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 3.6e-89 332.4 300 60.3
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.8e-88 330.1 300 60.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.3e-88 329.7 300 60.7
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 3.0e-88 329.3 299 58.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.9e-88 328.9 300 60.7
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.5e-87 326.2 300 60.0
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-87 325.9 301 59.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.3e-87 325.9 300 59.7
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.3e-87 325.5 301 59.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.3e-87 325.5 299 58.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 7.4e-87 324.7 299 58.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 9.7e-87 324.3 301 59.1
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.3e-86 323.9 299 58.9
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.2e-86 323.2 301 59.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.2e-86 323.2 300 59.3
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.8e-86 322.8 299 58.9
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.7e-86 322.4 302 59.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.7e-86 322.4 300 60.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 4.8e-86 322.0 299 58.9
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 6.3e-86 321.6 301 59.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.4e-85 320.5 299 58.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.4e-85 319.7 299 58.2
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.1e-85 319.3 300 59.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 3.1e-85 319.3 300 59.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.1e-85 318.9 300 58.3
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 6.9e-85 318.2 300 58.0
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 9.1e-85 317.8 299 58.9
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.6e-84 316.2 301 58.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.3e-83 313.9 299 57.2
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.3e-83 313.9 299 58.2
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 2.9e-83 312.8 299 57.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 5.0e-83 312.0 299 57.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 6.5e-83 311.6 299 57.2
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 8.5e-83 311.2 300 58.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.4e-82 310.5 270 61.1
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.2e-82 309.3 299 56.2
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 5.5e-82 308.5 299 57.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 5.5e-82 308.5 299 56.2
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.2e-82 308.1 308 55.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.2e-81 307.4 299 55.5
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.1e-81 306.6 299 55.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.1e-81 306.6 365 51.2
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.6e-81 305.8 300 56.7
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.6e-81 305.8 239 65.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.7e-81 305.4 300 55.3
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.9e-81 304.7 301 54.8
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 7.9e-81 304.7 301 54.8
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.9e-81 304.7 299 57.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-80 304.3 299 55.5
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-80 304.3 300 56.0
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.4e-80 303.9 317 54.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.8e-80 303.5 301 54.5
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.9e-80 302.4 299 55.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.9e-80 302.4 299 55.5
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 3.9e-80 302.4 300 55.7
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.0e-79 300.1 240 65.8
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.0e-79 300.1 299 55.9
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.4e-79 298.9 300 54.0
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.3e-78 297.4 243 64.6
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.2e-78 296.6 299 54.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.0e-76 290.0 300 53.7
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.6e-76 289.7 300 54.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.5e-76 289.3 300 53.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.5e-76 289.3 245 61.6
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.7e-76 288.1 239 62.8
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.7e-76 288.1 239 64.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.7e-76 288.1 300 53.3
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.0e-75 287.7 276 58.3
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.0e-75 287.7 239 63.2
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.2e-75 286.6 240 61.7
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 5.0e-75 285.4 300 53.0
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.0e-75 285.4 299 53.8
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 6.5e-75 285.0 300 54.0
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.6e-73 280.4 239 61.1
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.1e-73 278.5 300 52.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.8e-72 276.9 301 51.8
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.8e-72 276.9 239 60.7
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.9e-72 275.8 301 51.5
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.2e-72 275.4 301 51.8
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.8e-72 274.6 299 50.8
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 2.6e-71 273.1 256 55.1
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.7e-71 271.9 249 58.2
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.8e-70 269.6 301 52.8
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.8e-70 269.6 301 52.8
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 4.8e-70 268.9 302 51.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 4.8e-70 268.9 302 51.0
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 6.3e-70 268.5 249 58.6
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.4e-69 267.3 229 61.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.4e-69 266.5 292 51.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.1e-69 265.8 290 52.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 7.0e-69 265.0 303 51.5
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 9.1e-69 264.6 239 59.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 5.9e-68 261.9 253 55.7
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.7e-67 260.4 301 50.5
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.7e-67 260.4 301 50.5
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.7e-67 260.4 224 62.1
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-66 257.7 301 50.8
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.1e-66 257.7 301 50.2
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.5e-66 256.5 214 62.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 4.2e-66 255.8 301 49.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 5.5e-66 255.4 301 49.8
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.6e-63 246.5 299 46.5
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 9.7e-63 244.6 300 48.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.7e-62 242.7 293 46.8
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 4.1e-61 239.2 290 49.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.5e-60 236.1 293 46.4
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.0e-56 222.6 214 55.1
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.2e-55 221.1 301 44.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-55 221.1 301 44.2
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.4e-55 219.5 242 49.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 4.8e-54 215.7 296 43.9
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.1e-53 213.0 243 52.3
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 5.4e-53 212.2 299 43.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.3e-51 206.8 275 46.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 8.6e-51 204.9 239 48.5
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.1e-50 204.5 301 41.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.1e-50 204.5 238 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.5e-50 203.4 275 44.4
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.2e-49 201.1 301 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.5e-47 194.1 302 38.7
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 6.1e-41 172.2 229 47.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.4e-39 166.4 241 42.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.9e-37 160.6 198 45.5
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.3e-35 154.5 299 34.4
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 6.6e-35 152.1 84 84.5
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 7.3e-34 148.7 100 76.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.2e-31 141.4 243 35.4
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.0e-31 140.6 176 45.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 5.8e-31 139.0 303 29.7
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-29 133.7 84 78.6
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 3.0e-27 126.7 91 67.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 8.3e-22 108.6 297 27.9
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.4e-21 107.1 197 34.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.4e-21 105.9 80 70.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-19 100.9 91 56.0
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 3.3e-10 70.1 193 29.5
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 6.9e-08 62.4 245 24.5
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 8.4e-06 55.5 43 55.8


User provided reference genes

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