Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0102600 Rhododendron simsii HOM05D003563 ORTHO05D339399 8.7e-87 323.6 157 100.0
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 7.0e-12 74.7 45 75.6
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 1.2e-11 73.9 45 73.3
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 2.3e-10 69.7 47 70.2
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 2.9e-10 69.3 45 73.3
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 2.9e-10 69.3 45 73.3
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 5.0e-10 68.6 45 73.3
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 6.6e-10 68.2 45 71.1
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 6.6e-10 68.2 45 71.1
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 8.6e-10 67.8 45 71.1
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 8.6e-10 67.8 47 68.1
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 1.5e-09 67.0 45 71.1
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.5e-09 67.0 45 71.1
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 1.9e-09 66.6 45 71.1
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 1.9e-09 66.6 45 71.1
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 2.5e-09 66.2 45 71.1
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 2.5e-09 66.2 45 68.9
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 68.9
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 3.3e-09 65.9 45 71.1
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 4.3e-09 65.5 45 71.1
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 4.3e-09 65.5 45 66.7
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 71.1
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 71.1
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 71.1
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 66.7
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 66.7
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 66.7
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 66.7
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 5.6e-09 65.1 45 66.7
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 7.3e-09 64.7 45 66.7
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 7.3e-09 64.7 45 68.9
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 7.3e-09 64.7 45 68.9
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 9.5e-09 64.3 45 66.7
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 9.5e-09 64.3 45 64.4
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 9.5e-09 64.3 45 71.1
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 9.5e-09 64.3 45 68.9
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 1.2e-08 63.9 45 68.9
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.2e-08 63.9 45 68.9
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 1.2e-08 63.9 45 66.7
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 1.2e-08 63.9 45 66.7
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 1.2e-08 63.9 45 66.7
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 1.6e-08 63.5 45 68.9
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 1.6e-08 63.5 45 66.7
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.6e-08 63.5 45 64.4
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.6e-08 63.5 45 64.4
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 1.6e-08 63.5 45 64.4
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 2.1e-08 63.2 45 64.4
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 2.1e-08 63.2 45 66.7
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 2.1e-08 63.2 45 66.7
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.8e-08 62.8 45 66.7
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.8e-08 62.8 45 66.7
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 2.8e-08 62.8 45 68.9
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 2.8e-08 62.8 45 68.9
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 2.8e-08 62.8 45 66.7
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 3.6e-08 62.4 47 61.7
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 3.6e-08 62.4 53 58.5
Aqoxy508s001 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 4.7e-08 62.0 45 64.4
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 4.7e-08 62.0 45 64.4
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 4.7e-08 62.0 44 68.2
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 4.7e-08 62.0 45 68.9
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 4.7e-08 62.0 45 68.9
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 4.7e-08 62.0 45 66.7
vmacro21322 Vaccinium macrocarpon HOM05D001083 ORTHO05D001637 4.7e-08 62.0 122 39.3
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 6.1e-08 61.6 45 66.7
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 6.1e-08 61.6 45 64.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 8.0e-08 61.2 45 62.2
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 8.0e-08 61.2 45 66.7
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 8.0e-08 61.2 45 64.4
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 8.0e-08 61.2 45 66.7
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 8.0e-08 61.2 45 64.4
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 1.0e-07 60.8 45 66.7
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 1.4e-07 60.5 45 66.7
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 1.4e-07 60.5 44 63.6
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.4e-07 60.5 45 64.4
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.4e-07 60.5 44 63.6
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.4e-07 60.5 44 63.6
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 1.4e-07 60.5 45 62.2
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 1.4e-07 60.5 45 64.4
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 1.8e-07 60.1 45 62.2
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 1.8e-07 60.1 45 64.4
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 1.8e-07 60.1 45 62.2
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 2.3e-07 59.7 45 62.2
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 2.3e-07 59.7 45 62.2
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.3e-07 59.7 45 64.4
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 3.0e-07 59.3 45 60.0
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 3.0e-07 59.3 45 62.2
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 3.0e-07 59.3 44 65.9
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 3.0e-07 59.3 45 62.2
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 3.0e-07 59.3 45 62.2
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 3.0e-07 59.3 45 62.2
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 3.0e-07 59.3 44 61.4
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 4.0e-07 58.9 45 64.4
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 4.0e-07 58.9 45 57.8
CSS0021951 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 5.2e-07 58.5 44 63.6
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 5.2e-07 58.5 45 60.0
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 5.2e-07 58.5 45 62.2
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 5.2e-07 58.5 42 66.7
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 5.2e-07 58.5 44 61.4
Rhsim06G0073500 Rhododendron simsii HOM05D001083 ORTHO05D001637 5.2e-07 58.5 134 38.1
Dinv44843 Davidia involucrata HOM05D001083 ORTHO05D001637 8.9e-07 57.8 121 38.0
Glyma.06G032451 Glycine max HOM05D003563 ORTHO05D005325 8.9e-07 57.8 45 60.0
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.5e-06 57.0 119 38.7
Haze_22336 Corylus avellana HOM05D001083 ORTHO05D001637 1.5e-06 57.0 119 38.7
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 1.5e-06 57.0 47 59.6
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 1.5e-06 57.0 44 59.1
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 2.6e-06 56.2 45 57.8
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 2.6e-06 56.2 45 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 3.4e-06 55.8 45 60.0
Dinv42628 Davidia involucrata HOM05D001083 ORTHO05D001637 3.4e-06 55.8 123 36.6
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 4.4e-06 55.5 45 57.8
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 5.8e-06 55.1 45 60.0
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 5.8e-06 55.1 47 61.7
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 5.8e-06 55.1 45 60.0
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 5.8e-06 55.1 45 60.0
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 7.5e-06 54.7 45 60.0


User provided reference genes

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