Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.4e-187 658.7 336 100.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.6e-130 468.8 339 74.3
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 7.5e-120 434.5 284 76.4
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.6e-112 409.5 335 66.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 7.7e-109 397.9 281 71.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.7e-108 396.7 339 64.9
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.7e-108 396.7 339 64.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.3e-108 396.4 287 69.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.2e-106 390.6 288 69.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.0e-105 387.5 339 63.4
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.3e-105 386.3 334 62.9
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 4.4e-104 382.1 338 62.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.7e-103 380.2 279 69.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 8.3e-103 377.9 338 60.9
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.1e-102 375.6 342 57.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-101 374.0 337 58.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.5e-101 372.5 326 61.0
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.5e-101 372.5 333 58.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-100 370.5 339 58.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.0e-100 368.6 325 61.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.3e-99 365.5 278 64.4
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 5.6e-99 365.2 337 60.2
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.6e-98 363.6 338 58.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-98 363.2 339 57.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.1e-98 361.7 342 57.9
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.0e-97 360.9 336 60.4
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.8e-97 360.1 337 60.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 5.2e-97 358.6 282 62.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 8.9e-97 357.8 340 57.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.2e-96 357.5 323 59.4
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.2e-96 357.5 340 58.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 7.5e-96 354.8 318 59.7
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.9e-95 352.8 317 59.6
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.7e-95 352.4 337 59.6
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.9e-95 352.1 294 60.9
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 8.3e-95 351.3 278 64.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.1e-94 350.9 341 57.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.4e-94 350.5 337 60.8
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.4e-94 350.5 337 56.7
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 5.4e-94 348.6 318 56.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 7.0e-94 348.2 333 56.2
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 7.0e-94 348.2 309 61.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 7.0e-94 348.2 318 57.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 9.2e-94 347.8 337 54.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.2e-93 347.4 338 56.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-93 346.7 283 60.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.0e-93 345.1 341 58.1
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.3e-92 344.0 336 55.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.3e-92 344.0 283 59.7
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.3e-92 343.2 335 56.4
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 5.0e-92 342.0 317 57.7
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.0e-92 342.0 284 60.6
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.9e-91 340.1 299 60.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.6e-91 338.6 323 59.1
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 7.3e-91 338.2 335 52.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 9.5e-91 337.8 334 56.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 9.5e-91 337.8 292 57.9
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-90 337.0 305 57.7
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.8e-90 336.3 316 57.3
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.8e-90 336.3 333 56.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.1e-89 334.3 338 55.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.8e-89 333.6 294 58.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.0e-89 332.4 333 54.4
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.3e-87 327.4 307 57.7
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.2e-87 326.6 294 56.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.9e-87 325.5 323 54.5
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.9e-86 323.6 317 53.6
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.2e-86 322.8 278 57.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.2e-86 322.8 289 57.4
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.4e-86 322.0 340 54.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 7.0e-86 321.6 323 54.5
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.6e-85 320.5 337 50.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.1e-85 320.1 324 55.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.7e-85 319.7 336 53.6
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 6.0e-85 318.5 271 67.9
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 7.8e-85 318.2 336 53.3
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.0e-84 316.2 317 52.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 8.6e-84 314.7 198 80.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.3e-83 312.4 328 52.7
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.3e-83 312.4 325 52.9
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 5.6e-83 312.0 308 52.9
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 9.5e-83 311.2 325 53.2
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.2e-82 310.8 321 52.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-82 310.1 342 50.9
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.8e-82 309.7 296 56.4
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 6.2e-82 308.5 342 50.9
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.4e-81 307.4 329 51.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 6.8e-81 305.1 328 51.5
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.8e-80 302.0 342 49.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 9.9e-80 301.2 323 52.6
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.9e-79 299.7 307 53.7
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.7e-79 299.3 327 49.2
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 6.4e-79 298.5 336 48.5
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.9e-78 297.0 327 50.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.9e-78 297.0 324 51.5
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 5.4e-78 295.4 339 48.4
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.2e-77 294.3 321 50.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.1e-77 293.5 336 48.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.5e-77 292.7 352 47.2
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.8e-77 291.6 203 71.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.8e-77 291.6 203 71.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 3.0e-76 289.7 326 50.3
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.9e-76 289.3 328 48.8
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 6.6e-76 288.5 279 53.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.5e-75 286.6 311 49.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.1e-73 281.2 330 48.2
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.2e-72 277.7 304 49.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.8e-72 275.4 302 50.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.3e-71 274.2 312 47.4
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.7e-71 273.9 342 46.8
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.7e-71 273.9 276 52.9
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.9e-70 270.4 325 45.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 5.4e-70 268.9 313 46.0
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.1e-69 266.9 277 48.7
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.1e-69 266.9 204 62.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.3e-68 263.5 332 44.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 6.6e-68 261.9 336 47.3
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 5.3e-65 252.3 313 45.0
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.4e-64 249.6 265 48.3
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.8e-63 246.1 272 47.1
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.9e-63 245.7 273 47.6
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 9.3e-62 241.5 307 46.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.0e-61 238.8 249 51.4
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.6e-60 235.3 285 44.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.6e-59 231.5 302 45.0
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.4e-57 226.9 329 41.0
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 4.6e-53 212.6 238 53.4
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.8e-52 210.7 178 59.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.3e-51 206.1 297 41.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.4e-51 205.3 174 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.8e-50 203.4 273 42.1
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.8e-48 195.7 281 40.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 3.8e-47 193.0 272 39.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.2e-46 189.9 271 39.1
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.1e-46 188.7 273 38.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.1e-45 187.2 285 39.6
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.4e-35 152.1 206 40.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.3e-31 141.4 98 72.4
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-24 117.9 114 59.6
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-24 117.9 114 59.6
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.3e-23 114.8 202 34.7
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 5.5e-22 109.4 90 53.3
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 7.9e-21 105.5 101 50.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.9e-20 103.2 126 41.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-16 91.3 133 39.8
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.5e-15 85.9 80 52.5
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 8.5e-15 85.5 273 26.4
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.2e-14 83.2 193 32.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.1e-11 75.1 184 29.3


User provided reference genes

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