Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 9.5e-81 303.5 161 100.0
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.1e-56 222.6 164 79.3
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-52 209.5 166 77.1
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.4e-52 209.1 165 75.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.8e-50 203.0 161 72.0
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.0e-46 189.5 154 72.7
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.8e-45 185.3 135 72.6
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.1e-39 167.2 165 60.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 4.0e-39 165.2 122 76.2
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.5e-38 163.3 122 74.6
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.0e-38 162.9 92 85.9
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 4.5e-38 161.8 87 88.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 4.5e-38 161.8 92 83.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 7.6e-38 161.0 109 73.4
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 7.6e-38 161.0 147 63.3
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.9e-37 159.1 143 61.5
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 3.8e-37 158.7 148 60.1
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 6.5e-37 157.9 103 81.6
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.9e-36 156.4 136 58.8
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 3.2e-36 155.6 106 73.6
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 4.2e-36 155.2 123 66.7
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 5.5e-36 154.8 106 74.5
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 7.1e-36 154.5 142 62.7
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 9.3e-36 154.1 88 85.2
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.2e-35 153.7 87 85.1
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.6e-35 153.3 136 58.1
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 3.5e-35 152.1 113 69.9
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 4.6e-35 151.8 139 59.7
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 1.3e-34 150.2 139 61.9
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.8e-34 149.8 138 60.1
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.8e-34 149.8 165 60.0
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 3.9e-34 148.7 130 66.9
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 6.7e-34 147.9 115 67.0
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 8.7e-34 147.5 141 61.7
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.7e-34 147.5 113 69.9
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 1.9e-33 146.4 91 76.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.9e-33 146.4 108 68.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.5e-33 146.0 135 60.0
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 2.5e-33 146.0 127 60.6
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 3.3e-33 145.6 106 70.8
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 3.3e-33 145.6 137 61.3
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 4.3e-33 145.2 139 60.4
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 4.3e-33 145.2 112 67.0
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.3e-33 145.2 88 78.4
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.7e-33 144.8 134 60.4
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 7.4e-33 144.4 134 59.7
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 9.7e-33 144.1 85 80.0
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.3e-32 143.7 126 60.3
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.3e-32 143.7 134 59.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.6e-32 143.3 99 74.7
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.2e-32 142.9 133 54.9
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 2.8e-32 142.5 99 73.7
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.8e-32 142.5 137 59.9
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 3.7e-32 142.1 136 54.4
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 3.7e-32 142.1 113 68.1
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 3.7e-32 142.1 113 66.4
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 6.3e-32 141.4 107 72.9
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 6.3e-32 141.4 145 54.5
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.3e-32 141.4 87 75.9
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 8.2e-32 141.0 82 80.5
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 8.2e-32 141.0 105 71.4
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.1e-31 140.6 99 70.7
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.1e-31 140.6 86 77.9
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.4e-31 139.4 143 55.9
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 2.4e-31 139.4 104 68.3
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 3.1e-31 139.0 115 64.3
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.1e-31 138.7 129 57.4
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 4.1e-31 138.7 82 79.3
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 6.9e-31 137.9 113 66.4
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.2e-30 137.1 136 55.1
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.2e-30 137.1 119 61.3
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.5e-30 136.7 117 66.7
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.5e-30 136.7 88 71.6
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.5e-30 136.7 95 73.7
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.0e-30 136.3 100 69.0
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.0e-30 136.3 136 58.1
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.4e-30 135.6 136 57.4
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 5.9e-30 134.8 81 76.5
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.0e-29 134.0 142 52.8
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.0e-29 134.0 137 56.2
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.3e-29 133.7 115 62.6
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 1.7e-29 133.3 115 60.0
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.2e-29 132.9 90 68.9
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 2.2e-29 132.9 129 57.4
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 2.9e-29 132.5 88 71.6
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 5.0e-29 131.7 103 67.0
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 5.0e-29 131.7 125 57.6
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 5.0e-29 131.7 90 67.8
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 8.5e-29 131.0 148 52.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.4e-28 130.2 74 83.8
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.9e-28 129.8 100 65.0
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.9e-28 129.8 135 55.6
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.9e-28 129.8 82 75.6
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.2e-28 129.0 136 55.9
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 4.2e-28 128.6 77 80.5
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 4.2e-28 128.6 86 72.1
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 5.5e-28 128.3 86 72.1
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 5.5e-28 128.3 90 70.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.2e-27 127.1 104 67.3
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.1e-27 126.3 123 53.7
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 4.6e-27 125.2 84 73.8
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.0e-26 124.0 85 72.9
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 3.0e-26 122.5 83 69.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 3.0e-26 122.5 91 70.3
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.9e-26 122.1 111 60.4
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 6.7e-26 121.3 86 68.6
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 8.8e-26 120.9 86 67.4
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 8.8e-26 120.9 86 67.4
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 8.8e-26 120.9 86 67.4
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 8.8e-26 120.9 86 67.4
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 2.5e-25 119.4 81 69.1
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 4.3e-25 118.6 91 64.8
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 5.7e-25 118.2 83 68.7
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 7.4e-25 117.9 109 56.9
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 2.8e-24 115.9 79 73.4
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 3.7e-24 115.5 88 70.5
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 3.7e-24 115.5 136 47.8
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 7.7e-22 107.8 104 55.8
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 5.0e-21 105.1 118 52.5
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.2e-20 102.1 66 68.2
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 4.2e-20 102.1 87 60.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.2e-19 100.5 80 61.2
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 5.1e-18 95.1 86 53.5
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 5.1e-18 95.1 111 49.5
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 4.8e-16 88.6 56 73.2
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.4e-15 86.3 59 66.1
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.4e-15 86.3 59 66.1
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 4.1e-15 85.5 52 73.1
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 2.0e-14 83.2 94 51.1
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 4.5e-14 82.0 52 67.3
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 7.7e-14 81.3 63 63.5
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 7.7e-14 81.3 63 63.5
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 5.2e-10 68.6 79 48.1
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 5.2e-10 68.6 51 62.7


User provided reference genes

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