Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 3.3e-144 515.0 255 100.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 4.6e-122 441.4 258 86.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 1.3e-108 396.7 258 77.9
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.6e-104 382.5 258 76.0
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.6e-98 363.2 226 75.7
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.7e-98 361.7 238 75.2
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 8.8e-97 357.5 253 71.1
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.1e-96 357.1 239 72.0
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.1e-96 357.1 244 72.5
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.6e-96 355.9 247 72.1
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.3e-95 353.6 208 80.3
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.3e-95 353.6 242 71.1
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.7e-95 353.2 198 81.3
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 3.7e-95 352.1 258 69.8
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 3.7e-95 352.1 237 74.7
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.1e-94 350.5 245 72.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.1e-94 350.5 259 68.0
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.1e-94 349.0 250 69.2
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.1e-94 349.0 258 66.7
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.1e-94 348.6 243 72.0
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 9.1e-94 347.4 265 68.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.2e-93 347.1 238 71.4
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.6e-93 346.7 260 68.8
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.6e-93 345.9 256 70.3
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.6e-93 345.9 238 71.4
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.5e-93 345.5 238 71.0
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 5.9e-93 344.7 263 68.1
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.9e-93 344.7 263 68.1
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 5.9e-93 344.7 243 69.1
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.9e-93 344.7 237 72.2
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 7.7e-93 344.4 269 66.9
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-92 344.0 261 68.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.3e-92 343.6 243 68.3
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.7e-92 343.2 248 68.1
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.7e-92 343.2 260 66.2
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.2e-92 342.8 229 72.5
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 5.0e-92 341.7 194 79.4
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 8.5e-92 340.9 248 67.3
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 8.5e-92 340.9 243 70.0
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 8.5e-92 340.9 192 80.2
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.1e-91 340.5 261 68.2
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.1e-91 340.5 247 68.4
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.1e-91 340.5 243 67.9
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 2.5e-91 339.3 246 67.9
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.2e-91 339.0 214 72.9
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 4.2e-91 338.6 258 66.7
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 5.5e-91 338.2 250 69.6
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 7.2e-91 337.8 267 66.7
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 9.4e-91 337.4 251 68.1
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 9.4e-91 337.4 229 70.3
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 9.4e-91 337.4 247 68.0
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.2e-90 337.0 253 65.6
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.7e-90 335.9 251 66.9
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 3.6e-90 335.5 249 69.1
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 6.1e-90 334.7 252 65.1
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.0e-89 334.0 253 65.6
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.0e-89 334.0 258 65.5
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.3e-89 332.8 244 69.3
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.0e-89 332.0 250 69.6
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.2e-89 331.6 228 71.1
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.2e-89 331.6 197 76.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 8.8e-89 330.9 251 67.3
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.2e-88 330.5 245 65.7
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.5e-88 330.1 249 66.7
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.0e-88 329.7 192 78.6
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.0e-88 329.7 227 68.7
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.4e-88 328.9 195 75.9
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.4e-88 328.6 244 68.0
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.7e-87 326.6 241 65.1
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.2e-87 326.2 260 63.1
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 2.8e-87 325.9 211 73.0
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 8.3e-87 324.3 247 66.8
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.3e-87 324.3 193 77.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 8.3e-87 324.3 197 75.6
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.1e-86 323.9 226 66.8
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.4e-86 323.6 200 72.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-86 323.2 252 67.9
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 5.3e-86 321.6 260 62.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 9.1e-86 320.9 258 62.4
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 9.1e-86 320.9 194 76.3
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.6e-85 320.1 251 66.1
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.6e-85 320.1 201 75.6
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 2.0e-85 319.7 228 69.3
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 3.5e-85 318.9 211 69.2
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 3.5e-85 318.9 198 76.3
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.5e-85 318.9 193 77.2
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 7.7e-85 317.8 192 76.6
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.0e-84 317.4 188 77.7
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.3e-84 317.0 210 68.6
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 2.9e-84 315.8 214 67.8
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 8.5e-84 314.3 215 66.5
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 8.5e-84 314.3 215 66.5
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.1e-83 313.9 225 66.2
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.5e-83 313.5 215 67.4
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.2e-83 312.4 214 66.8
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.2e-83 312.0 226 71.7
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 5.5e-83 311.6 214 66.8
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.2e-83 311.2 197 72.6
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 9.4e-83 310.8 233 62.7
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.7e-82 309.3 259 63.3
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.6e-82 308.9 223 69.5
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 6.1e-82 308.1 200 75.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.0e-82 307.8 160 89.4
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-81 306.2 200 73.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 5.2e-81 305.1 259 63.3
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 7.5e-80 301.2 197 73.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.3e-79 300.4 262 59.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.7e-79 298.9 216 70.8
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.7e-79 298.9 157 86.6
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 3.5e-77 292.4 246 62.2
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-77 292.4 261 61.7
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.8e-76 288.9 161 80.7
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.9e-75 286.6 251 56.6
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 9.5e-75 284.3 167 76.6
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.6e-74 283.5 202 69.8
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 4.4e-72 275.4 266 57.9
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.5e-69 265.4 215 60.9
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.8e-65 251.5 233 57.5
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.4e-62 243.8 245 55.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.2e-61 240.7 235 48.9
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.5e-59 233.8 148 75.7
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 6.2e-58 228.4 173 65.9
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.6e-53 213.8 195 51.3
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 2.8e-50 203.0 130 67.7
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.8e-48 195.3 103 86.4
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.7e-47 193.7 102 85.3
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-46 191.0 152 64.5
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.6e-40 168.3 108 70.4
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.5e-35 153.3 91 79.1
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 4.3e-35 152.5 100 74.0
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-34 150.6 137 59.1
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.0e-33 144.8 101 70.3
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.6e-32 143.3 197 43.1
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 4.0e-25 119.4 166 39.2
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 5.8e-24 115.5 252 32.5
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 2.2e-23 113.6 241 31.1
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.4e-23 112.1 241 31.1
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.4e-22 110.9 227 32.2
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.2e-22 109.4 212 33.0
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.2e-22 109.4 190 34.2
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 4.2e-22 109.4 201 34.3
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 5.4e-22 109.0 190 34.7
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.7e-21 106.7 156 44.9
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 7.9e-21 105.1 200 33.0
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 7.9e-21 105.1 209 32.5
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.3e-20 104.4 246 32.1
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.8e-20 104.0 246 31.7
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.8e-20 104.0 246 28.5
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.8e-20 104.0 190 32.6
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.3e-20 103.6 196 30.1
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 3.0e-20 103.2 230 30.4
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 3.9e-20 102.8 200 32.5
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 5.1e-20 102.4 202 30.2
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 8.7e-20 101.7 183 32.8
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.1e-19 101.3 219 31.1
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.5e-19 100.9 69 69.6
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 3.3e-19 99.8 190 32.1
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 4.3e-19 99.4 215 33.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.8e-18 96.7 178 34.8
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 2.4e-17 93.6 152 35.5
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 3.1e-17 93.2 133 39.8
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.0e-17 92.8 53 79.2
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 4.5e-16 89.4 173 32.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.0e-15 88.2 145 31.7
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.3e-15 87.8 54 79.6
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 2.9e-15 86.7 205 35.1
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.8e-15 86.3 184 33.7
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.4e-15 85.1 186 30.6
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.7e-13 80.1 207 29.5
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 1.8e-12 77.4 192 29.2
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.8e-12 77.4 184 32.6
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.1e-12 75.9 105 47.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.3e-11 73.2 136 34.6
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 4.3e-11 72.8 143 34.3
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 8.2e-10 68.6 37 86.5
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.8e-09 67.4 132 34.1
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 9.0e-09 65.1 113 44.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.0e-08 63.9 118 33.9
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 3.8e-07 59.7 75 40.0
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 1.9e-06 57.4 105 36.2
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.5e-06 55.8 94 38.3


User provided reference genes

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