Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 6.8e-53 210.3 100 100.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 4.9e-43 177.6 100 86.0
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.1e-38 162.2 101 78.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.8e-38 161.8 99 77.8
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.8e-38 161.8 99 77.8
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.8e-38 161.8 96 80.2
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.6e-38 161.4 103 76.7
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.1e-37 159.8 100 76.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.1e-37 158.3 101 74.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 3.1e-37 158.3 98 76.5
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.0e-37 157.9 101 76.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 6.8e-37 157.1 100 74.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.9e-37 156.8 101 74.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 8.9e-37 156.8 101 73.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-36 156.0 102 75.5
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 4.4e-36 154.5 101 73.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 5.8e-36 154.1 101 72.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 7.6e-36 153.7 100 73.0
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.9e-35 151.8 101 73.3
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.9e-35 151.8 100 74.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.9e-35 151.8 101 72.3
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 4.9e-35 151.0 102 72.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 8.4e-35 150.2 100 71.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 94 75.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.4e-34 149.4 103 72.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.4e-34 149.4 101 72.3
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.4e-34 149.4 100 74.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.9e-34 149.1 100 72.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-34 149.1 99 69.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.4e-34 148.7 102 71.6
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 3.2e-34 148.3 102 71.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 3.2e-34 148.3 97 73.2
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 5.4e-34 147.5 104 69.2
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.4e-34 147.5 98 72.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.4e-34 147.5 99 70.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 7.1e-34 147.1 103 70.9
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.1e-34 147.1 103 70.9
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 7.1e-34 147.1 102 70.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 9.2e-34 146.7 99 68.7
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 9.2e-34 146.7 101 72.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 67.3
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.2e-33 146.4 97 72.2
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.2e-33 146.4 103 70.9
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-33 146.0 103 70.9
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.1e-33 145.6 103 69.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.1e-33 145.6 99 71.7
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.1e-33 145.6 102 70.6
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.1e-33 145.6 102 71.6
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-33 145.2 103 69.9
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.7e-33 145.2 99 68.7
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.7e-33 145.2 103 70.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 3.5e-33 144.8 97 72.2
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.5e-33 144.8 97 72.2
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.5e-33 144.8 85 81.2
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 3.5e-33 144.8 101 71.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.5e-33 144.8 97 72.2
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.5e-33 144.8 97 72.2
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.5e-33 144.8 101 72.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 4.6e-33 144.4 99 71.7
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.6e-33 144.4 98 74.5
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.0e-33 144.1 101 67.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 6.0e-33 144.1 102 70.6
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.0e-33 144.1 99 68.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 7.8e-33 143.7 88 78.4
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 7.8e-33 143.7 97 71.1
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.8e-33 143.7 99 67.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.0e-32 143.3 103 69.9
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-32 143.3 101 70.3
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.3e-32 142.9 99 68.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.3e-32 142.9 101 70.3
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.7e-32 142.5 101 68.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.3e-32 142.1 101 70.3
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.3e-32 142.1 97 70.1
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 3.0e-32 141.7 99 71.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.0e-32 141.7 104 70.2
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.9e-32 141.4 102 70.6
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.9e-32 141.4 95 68.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.9e-32 141.4 95 68.4
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.1e-32 141.0 99 71.7
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 5.1e-32 141.0 99 68.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.1e-32 141.0 103 69.9
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.6e-32 140.6 96 70.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 6.6e-32 140.6 98 66.3
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.5e-31 139.4 99 70.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-31 139.0 96 69.8
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-31 139.0 96 69.8
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.9e-31 139.0 100 68.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 3.3e-31 138.3 100 65.0
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.3e-31 138.3 105 63.8
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.6e-31 137.5 89 74.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 7.3e-31 137.1 98 69.4
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 7.3e-31 137.1 100 65.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 9.6e-31 136.7 101 64.4
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.8e-30 135.2 97 66.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.6e-30 134.8 100 67.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.8e-30 134.4 88 73.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.2e-30 134.0 100 67.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.4e-29 132.9 88 75.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.4e-29 132.9 103 66.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.4e-29 132.9 96 61.5
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.1e-29 131.7 100 66.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.1e-29 131.7 100 66.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.0e-29 131.3 90 72.2
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 5.3e-29 131.0 95 66.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 5.3e-29 131.0 89 73.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 6.9e-29 130.6 103 64.1
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 6.9e-29 130.6 100 68.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-28 129.8 90 70.0
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 127 55.1
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.5e-28 129.4 97 64.9
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.4e-28 127.9 74 74.3
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.4e-28 127.9 88 70.5
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 5.8e-28 127.5 97 63.9
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 7.6e-28 127.1 90 68.9
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.7e-27 125.9 100 60.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.2e-27 125.6 89 68.5
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 4.9e-27 124.4 99 64.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 4.9e-27 124.4 101 65.3
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.2e-26 121.3 88 65.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 3.5e-25 118.2 87 62.1
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 3.5e-25 118.2 90 67.8
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.6e-25 117.9 73 71.2
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.7e-24 115.9 90 64.4
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 8.7e-24 113.6 101 59.4
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 8.7e-24 113.6 90 63.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.1e-23 113.2 88 62.5
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.6e-23 110.9 91 63.7
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.8e-22 108.6 73 76.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 9.9e-20 100.1 75 61.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.2e-18 95.1 50 80.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.1e-18 94.0 74 64.9
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.2e-17 93.2 74 64.9
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-16 89.7 91 51.6
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.8e-16 89.4 100 54.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.0e-16 88.6 73 63.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-16 87.8 109 48.6
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 1.9e-15 85.9 74 64.9
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.8e-14 82.0 75 60.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.3e-13 77.8 76 56.6
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.5e-12 76.3 67 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.0e-12 75.9 75 49.3
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 3.4e-12 75.1 70 57.1
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.0e-11 73.6 75 56.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 4.9e-11 71.2 99 42.4
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 6.5e-11 70.9 54 61.1
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 5.5e-10 67.8 56 60.7
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 5.5e-10 67.8 56 60.7
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.3e-10 67.0 63 50.8
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.0e-08 63.5 35 77.1
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 4.3e-07 58.2 81 38.3
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 6.2e-06 54.3 58 43.1
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 6.2e-06 54.3 42 57.1


User provided reference genes

Program Settings