Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.0e-179 630.9 371 100.0
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.6e-123 446.8 403 66.3
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.9e-116 423.3 388 66.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.0e-109 401.0 367 60.2
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 3.8e-109 399.1 406 60.8
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.5e-109 397.9 405 57.8
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.6e-107 393.7 392 60.5
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 4.0e-106 389.0 408 63.5
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 8.8e-106 387.9 396 61.4
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 2.0e-105 386.7 410 64.6
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.7e-105 385.2 403 60.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.7e-104 383.6 400 63.8
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.2e-104 383.3 393 60.3
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.7e-104 382.5 409 61.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.9e-104 382.1 400 63.8
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 6.3e-104 381.7 410 60.2
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 8.3e-104 381.3 395 63.5
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-103 380.6 400 63.0
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.8e-103 380.2 419 61.8
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.4e-103 379.8 383 60.1
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.1e-103 379.4 414 61.4
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 9.2e-103 377.9 406 61.3
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.5e-102 375.9 396 56.8
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.9e-101 372.9 400 62.5
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.8e-101 372.5 403 63.8
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.9e-100 370.2 400 65.8
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 9.5e-100 367.9 410 60.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.1e-99 366.7 378 61.9
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.8e-99 366.3 380 55.8
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.0e-98 362.8 378 61.9
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.8e-98 361.7 392 58.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 8.9e-98 361.3 404 61.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.4e-97 359.0 386 58.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 5.7e-97 358.6 375 60.8
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.1e-95 354.4 406 62.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.3e-93 347.4 435 60.0
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.0e-93 346.3 419 61.3
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 6.6e-93 345.1 395 54.9
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.1e-92 344.4 378 54.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.0e-91 338.2 373 56.3
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 8.9e-90 334.7 372 52.7
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 5.8e-89 332.0 382 58.4
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 3.7e-88 329.3 381 60.4
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 3.7e-88 329.3 419 57.5
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.9e-88 328.9 372 55.9
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.9e-87 327.0 374 56.7
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.7e-85 320.5 374 56.1
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.6e-85 318.5 405 57.3
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.9e-84 317.0 414 55.6
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 3.3e-84 316.2 381 58.8
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 4.3e-84 315.8 378 59.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.8e-83 313.2 412 57.5
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 3.6e-83 312.8 404 55.2
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 6.2e-83 312.0 435 47.1
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.1e-82 311.2 372 60.2
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.4e-82 310.8 413 51.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.3e-82 310.1 407 50.9
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 6.8e-82 308.5 396 50.8
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.9e-80 302.4 371 62.0
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 2.8e-75 286.6 381 53.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-74 283.9 373 59.8
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-74 283.9 373 59.8
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 7.1e-71 271.9 372 52.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.0e-69 268.1 372 55.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.5e-68 264.2 398 48.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.7e-64 250.8 308 55.8
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.8e-59 233.4 313 51.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 7.1e-55 218.8 388 42.8
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 2.1e-54 217.2 264 62.5
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.1e-52 211.5 282 49.6
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 7.4e-52 208.8 231 53.2
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.2e-49 201.4 309 46.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.5e-49 199.5 476 41.2
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.5e-47 192.6 433 41.3
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.6e-43 181.0 303 51.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.4e-42 177.2 245 46.1
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.9e-40 169.5 141 56.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 3.2e-39 166.8 443 38.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 7.1e-39 165.6 271 42.1
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 7.1e-39 165.6 289 38.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.2e-38 164.9 258 40.7
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.1e-38 164.1 276 39.5
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.1e-38 164.1 277 39.0
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.7e-38 163.7 258 40.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.7e-38 163.7 395 32.7
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 4.6e-38 162.9 236 41.9
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 6.0e-38 162.5 273 38.1
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 6.0e-38 162.5 276 38.8
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.3e-37 160.6 258 40.7
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.3e-37 160.6 255 40.0
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.3e-37 160.6 269 40.1
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.3e-37 160.6 202 46.0
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.0e-37 160.2 196 46.9
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.0e-37 160.2 167 50.3
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 5.1e-37 159.5 266 39.1
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 6.7e-37 159.1 156 53.2
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.7e-37 159.1 167 50.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.7e-37 159.1 167 50.3
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 8.7e-37 158.7 188 45.7
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.5e-36 157.9 398 37.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.5e-36 157.9 417 41.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.5e-36 157.9 130 56.2
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.9e-36 157.5 272 38.6
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.9e-36 157.5 270 38.1
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.5e-36 157.1 268 37.7
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.5e-36 157.1 208 45.7
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.3e-36 156.8 268 37.7
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 5.7e-36 156.0 276 38.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.7e-36 156.0 428 43.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-35 154.8 258 39.9
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.3e-35 154.8 190 47.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-35 154.5 121 54.5
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-35 154.5 121 54.5
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-35 154.1 255 40.4
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.1e-35 154.1 274 37.6
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.8e-35 153.7 421 37.5
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.8e-35 153.7 168 49.4
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.8e-35 153.7 168 49.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 3.7e-35 153.3 444 36.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 3.7e-35 153.3 444 36.3
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.7e-35 153.3 446 34.3
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 6.3e-35 152.5 255 40.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-34 151.8 165 48.5
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-34 151.8 267 39.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.1e-34 151.8 121 57.0
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-34 151.8 436 35.8
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.4e-34 151.4 166 47.0
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.4e-34 151.4 167 49.7
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.4e-34 151.4 443 39.5
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.4e-34 150.6 442 37.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 2.4e-34 150.6 208 44.2
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.1e-34 150.2 180 47.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 5.3e-34 149.4 432 38.2
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.0e-34 148.7 255 39.6
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 9.0e-34 148.7 266 38.7
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 9.0e-34 148.7 228 42.5
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.2e-33 148.3 179 46.4
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-33 147.9 186 44.1
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.6e-33 147.1 211 41.2
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 3.4e-33 146.7 431 36.9
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.4e-33 146.7 201 43.8
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 5.9e-33 146.0 448 36.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 5.9e-33 146.0 155 48.4
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 7.6e-33 145.6 201 44.3
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 7.6e-33 145.6 100 63.0
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.7e-32 144.4 210 40.0
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.2e-32 144.1 232 40.9
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.9e-32 143.7 256 39.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-31 141.4 84 76.2
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 7.2e-31 139.0 407 32.2
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.8e-29 134.4 191 44.0
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.8e-29 134.4 191 44.0
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.7e-29 132.1 401 38.2
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 9.7e-28 128.6 170 42.9
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.2e-27 127.5 201 42.8
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 2.2e-27 127.5 252 36.9
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.3e-27 125.9 236 39.0
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 6.1e-22 109.4 176 45.5
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.9e-15 87.8 226 36.7
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 3.7e-11 73.6 50 72.0
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.2e-06 58.5 48 56.2
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 8.0e-06 55.8 208 29.8


User provided reference genes

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