Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 6.6e-119 430.6 207 100.0
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 2.3e-111 405.6 207 92.8
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.9e-105 386.0 203 88.7
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 5.5e-105 384.4 203 87.7
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 9.3e-97 357.1 203 81.3
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.8e-95 352.8 203 81.3
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 1.8e-95 352.8 201 82.1
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.1e-94 350.1 204 80.4
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.1e-94 350.1 203 79.3
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 4.1e-92 341.7 204 77.0
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.2e-91 340.1 204 75.5
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.2e-91 340.1 203 78.3
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 2.0e-91 339.3 203 76.8
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 5.9e-91 337.8 204 75.0
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.0e-90 337.0 204 75.0
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 1.7e-90 336.3 203 76.4
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 2.2e-90 335.9 203 77.3
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 2.2e-90 335.9 203 75.9
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.5e-90 334.3 203 75.9
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.5e-90 334.3 203 75.9
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.1e-89 333.6 202 76.2
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.1e-89 333.6 203 76.4
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 2.5e-89 332.4 203 74.9
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 7.2e-89 330.9 203 76.4
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 9.3e-89 330.5 203 74.9
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 9.3e-89 330.5 203 73.4
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 9.3e-89 330.5 203 77.8
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.2e-88 330.1 203 73.9
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.6e-88 328.6 203 74.9
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 3.6e-88 328.6 203 72.9
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 7.9e-88 327.4 203 74.4
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.0e-87 327.0 203 71.9
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.0e-87 327.0 203 76.8
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.0e-87 327.0 203 76.8
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 2.3e-87 325.9 203 71.9
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.9e-87 325.1 206 72.8
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 5.1e-87 324.7 203 74.4
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 3.3e-86 322.0 203 71.9
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 4.3e-86 321.6 203 71.9
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 9.7e-86 320.5 203 72.9
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.3e-85 320.1 183 82.0
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.7e-85 319.7 203 70.4
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 2.8e-85 318.9 203 71.9
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 2.8e-85 318.9 196 72.4
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 4.8e-85 318.2 204 70.6
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 8.2e-85 317.4 203 71.9
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.8e-84 316.2 203 70.9
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 9.1e-84 313.9 205 69.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.2e-83 313.5 203 69.0
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 5.9e-83 311.2 203 69.5
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 5.0e-82 308.1 203 70.4
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 6.5e-82 307.8 203 69.0
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 8.5e-82 307.4 201 70.1
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 1.1e-81 307.0 203 66.5
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 1.1e-81 307.0 206 65.5
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 4.2e-81 305.1 203 68.0
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 5.5e-81 304.7 206 64.6
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.6e-80 303.1 206 64.6
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.6e-80 303.1 203 65.5
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.1e-80 302.8 203 65.0
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 3.6e-80 302.0 206 64.6
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 3.6e-80 302.0 206 64.6
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 4.7e-80 301.6 207 64.3
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 7.9e-80 300.8 202 65.3
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 7.9e-80 300.8 203 69.5
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 5.1e-79 298.1 204 68.6
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 5.1e-79 298.1 204 68.6
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 5.1e-79 298.1 203 68.5
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.1e-78 297.0 207 63.3
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 2.0e-78 296.2 203 70.0
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 3.3e-78 295.4 206 70.4
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 7.4e-78 294.3 205 67.8
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 7.4e-78 294.3 206 70.4
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 2.8e-77 292.4 203 67.0
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 3.7e-77 292.0 182 73.6
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 1.8e-76 289.7 176 76.1
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 4.1e-76 288.5 210 65.7
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 5.3e-76 288.1 202 66.8
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 6.9e-76 287.7 186 69.4
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 7.7e-75 284.3 164 79.9
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.5e-73 279.3 205 64.9
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 4.4e-70 268.5 181 65.7
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 7.4e-70 267.7 183 67.8
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 2.6e-67 259.2 161 74.5
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 2.6e-67 259.2 161 74.5
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.7e-66 256.5 162 71.0
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 2.9e-66 255.8 145 82.1
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 3.0e-63 245.7 203 56.2
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 8.8e-63 244.2 161 70.8
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 7.7e-59 231.1 145 73.8
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.7e-58 229.9 213 51.6
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.7e-58 229.9 213 51.6
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 3.8e-58 228.8 147 70.1
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 5.0e-58 228.4 186 57.0
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 6.5e-58 228.0 218 49.5
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 1.2e-54 217.2 212 48.6
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.2e-51 207.2 146 61.0
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.7e-51 206.1 121 75.2
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 3.5e-51 205.7 148 65.5
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 8.6e-50 201.1 168 57.7
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 1.4e-47 193.7 214 44.4
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 2.3e-47 193.0 121 66.9
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 6.1e-40 168.3 106 70.8
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 2.3e-39 166.4 106 69.8
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 1.7e-37 160.2 154 49.4
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.3e-34 150.6 145 53.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 5.0e-34 148.7 156 45.5
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 5.6e-33 145.2 168 41.7
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 1.1e-25 120.9 268 27.6
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.5e-25 119.8 177 35.6
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 6.2e-24 115.2 209 31.1
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 8.1e-24 114.8 104 55.8
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 1.4e-23 114.0 199 32.7
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 3.5e-19 99.4 55 78.2
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 1.9e-17 93.6 60 68.3
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 5.8e-14 82.0 54 64.8


User provided reference genes

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