Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 4.9e-61 237.7 123 100.0
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 3.5e-59 231.5 123 96.7
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 7.6e-54 213.8 120 91.7
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.7e-51 205.3 123 86.2
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.7e-51 205.3 123 86.2
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 1.7e-50 202.6 122 86.9
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 3.9e-50 201.4 123 85.4
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.1e-48 195.7 123 82.9
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 1.1e-47 193.4 122 81.1
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 5.3e-47 191.0 122 80.3
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 2.0e-46 189.1 114 82.5
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 9.9e-46 186.8 121 80.2
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 9.9e-46 186.8 121 80.2
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.3e-45 186.4 121 80.2
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 1.3e-45 186.4 121 80.2
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.7e-45 186.0 117 81.2
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.2e-45 185.7 123 78.0
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.2e-45 185.7 123 78.0
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 3.8e-45 184.9 114 84.2
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 6.4e-45 184.1 121 79.3
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 1.1e-44 183.3 114 81.6
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 1.1e-44 183.3 112 83.0
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 3.2e-44 181.8 112 80.4
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 3.2e-44 181.8 114 78.9
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 4.2e-44 181.4 112 82.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 5.4e-44 181.0 126 74.6
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.1e-43 179.1 116 80.2
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.1e-43 179.1 116 80.2
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 2.1e-43 179.1 118 77.1
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 2.1e-43 179.1 117 77.8
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 2.7e-43 178.7 120 76.7
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 3.5e-43 178.3 123 73.2
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 3.5e-43 178.3 114 80.7
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 4.6e-43 177.9 117 77.8
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 6.0e-43 177.6 120 74.2
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 6.0e-43 177.6 123 72.4
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 1.0e-42 176.8 127 73.2
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 1.3e-42 176.4 114 78.1
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 1.8e-42 176.0 112 80.4
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 1.8e-42 176.0 121 72.7
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 1.8e-42 176.0 121 73.6
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 2.3e-42 175.6 114 77.2
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 5.1e-42 174.5 116 78.4
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 8.7e-42 173.7 121 74.4
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 8.7e-42 173.7 120 74.2
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 8.7e-42 173.7 113 77.0
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 1.1e-41 173.3 114 77.2
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.1e-41 173.3 110 77.3
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 1.5e-41 172.9 114 75.4
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 1.9e-41 172.6 117 76.1
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 2.5e-41 172.2 117 72.6
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 4.3e-41 171.4 123 70.7
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 4.3e-41 171.4 112 74.1
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 7.4e-41 170.6 117 75.2
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 7.4e-41 170.6 117 76.1
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 7.4e-41 170.6 116 75.9
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 1.3e-40 169.9 119 73.1
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.6e-40 169.5 121 71.9
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 1.6e-40 169.5 117 70.1
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 8.1e-40 167.2 121 70.2
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 8.1e-40 167.2 117 71.8
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 1.8e-39 166.0 120 70.8
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 2.4e-39 165.6 116 70.7
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.0e-39 164.9 116 75.9
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 6.9e-39 164.1 117 71.8
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.5e-38 162.9 123 70.7
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 2.0e-38 162.5 119 68.1
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 2.6e-38 162.2 110 71.8
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 3.8e-37 158.3 113 69.9
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 6.4e-37 157.5 112 71.4
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 4.2e-36 154.8 119 66.4
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 4.2e-36 154.8 115 68.7
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 2.1e-35 152.5 119 64.7
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.5e-35 151.8 102 73.5
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 3.5e-35 151.8 122 68.0
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 6.0e-35 151.0 118 63.6
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 5.1e-34 147.9 101 74.3
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 8.7e-34 147.1 115 62.6
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 3.3e-33 145.2 109 63.3
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.6e-32 142.9 103 66.0
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 1.6e-32 142.9 103 65.0
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.6e-32 142.9 113 65.5
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.6e-32 142.9 116 64.7
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 2.1e-32 142.5 94 71.3
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.1e-32 142.5 102 71.6
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.7e-32 141.7 103 65.0
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 8.2e-32 140.6 114 64.9
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 1.8e-31 139.4 114 63.2
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 6.9e-31 137.5 78 89.7
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 8.4e-29 130.6 94 71.3
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.2e-28 128.3 78 80.8
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.2e-28 128.3 78 80.8
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 7.1e-28 127.5 122 54.9
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 7.1e-28 127.5 115 58.3
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 9.3e-28 127.1 110 58.2
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 1.6e-27 126.3 92 68.5
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 2.1e-27 125.9 76 81.6
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 6.0e-27 124.4 76 82.9
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 1.8e-26 122.9 89 67.4
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 3.9e-26 121.7 89 66.3
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 1.1e-25 120.2 85 70.6
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.9e-25 119.4 116 56.9
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.9e-25 119.4 116 56.9
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 4.3e-25 118.2 114 53.5
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.3e-24 116.7 75 76.0
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 8.2e-24 114.0 95 62.1
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 9.0e-23 110.5 69 79.7
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 8.5e-21 104.0 108 50.0
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 8.5e-21 104.0 72 66.7
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.9e-20 102.8 72 66.7
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 3.2e-20 102.1 71 66.2
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 5.5e-20 101.3 112 46.4
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 66.2
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 66.2
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 66.2
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 7.2e-20 100.9 71 66.2
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 9.3e-20 100.5 72 65.3
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 9.3e-20 100.5 90 63.3
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 1.6e-19 99.8 59 81.4
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.6e-19 99.8 59 81.4
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 2.1e-19 99.4 71 64.8
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.1e-19 99.4 103 45.6
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 2.5e-17 92.4 72 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 4.3e-17 91.7 106 42.5
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 2.8e-16 89.0 103 44.7
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 4.5e-14 81.6 97 41.2
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 7.2e-12 74.3 62 61.3
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 6.1e-11 71.2 43 81.4
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.7e-08 62.0 55 52.7
FAN06G1951 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.5e-06 55.1 102 35.3


User provided reference genes

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