Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 2.9e-299 1031.2 538 100.0
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.7e-246 855.9 541 86.3
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.5e-175 620.2 405 80.2
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 2.1e-172 609.8 394 81.5
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 6.7e-171 604.7 392 81.4
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 1.1e-162 577.4 367 80.7
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 4.5e-159 565.5 394 75.6
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 8.5e-158 561.2 412 73.5
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-157 559.3 367 78.5
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 7.2e-157 558.1 402 72.4
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 7.2e-157 558.1 383 76.0
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.2e-156 557.4 405 72.3
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.9e-155 552.4 367 79.3
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 6.7e-155 551.6 395 74.2
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 3.7e-153 545.8 397 73.0
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 6.3e-153 545.0 410 69.8
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 5.3e-152 542.0 397 71.8
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 6.9e-152 541.6 386 71.8
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 9.1e-152 541.2 370 73.0
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 3.4e-151 539.3 393 70.0
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.0e-150 537.7 397 71.0
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.3e-150 537.3 373 74.5
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.2e-150 536.6 369 75.9
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 3.8e-150 535.8 374 72.7
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 5.5e-149 531.9 403 69.5
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 5.5e-149 531.9 382 71.7
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 2.1e-148 530.0 374 73.3
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 3.6e-148 529.3 374 73.5
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.8e-147 526.9 401 69.8
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.8e-147 526.9 353 76.2
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.3e-147 526.6 419 68.3
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 1.5e-146 523.9 397 68.0
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.3e-145 520.8 370 71.9
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.7e-145 520.4 414 66.2
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.7e-145 520.4 391 69.6
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 2.8e-145 519.6 354 73.7
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 3.7e-145 519.2 383 70.5
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 3.7e-145 519.2 353 73.1
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 3.7e-145 519.2 354 74.0
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 4.8e-145 518.8 395 67.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 6.3e-145 518.5 446 63.0
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 2.4e-144 516.5 411 65.9
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 3.1e-144 516.2 389 69.2
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 4.1e-144 515.8 376 71.8
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 7.0e-144 515.0 376 70.7
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 7.0e-144 515.0 374 71.9
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.2e-143 514.2 413 66.6
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.2e-143 514.2 364 72.0
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 3.5e-143 512.7 391 69.1
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 4.5e-143 512.3 389 69.4
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.7e-142 510.4 384 68.8
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 2.9e-142 509.6 353 73.9
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 6.5e-142 508.4 369 69.9
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.5e-141 507.3 365 71.2
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 7.2e-141 505.0 360 70.8
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 9.4e-141 504.6 371 71.7
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 1.2e-140 504.2 351 73.5
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.2e-140 504.2 398 66.1
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 2.7e-140 503.1 368 72.0
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.0e-139 501.1 347 74.4
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 6.7e-139 498.4 400 64.2
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 1.3e-137 494.2 399 63.7
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-137 494.2 353 68.3
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 1.7e-137 493.8 367 67.3
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 4.8e-137 492.3 366 66.4
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 4.8e-137 492.3 366 66.4
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 6.3e-137 491.9 353 72.2
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.1e-136 491.1 365 69.9
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.4e-136 490.7 343 73.5
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.4e-136 490.0 369 65.6
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 2.4e-136 490.0 376 64.9
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.1e-136 489.6 402 64.4
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.2e-135 487.6 369 65.6
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.6e-135 487.3 401 63.8
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 2.0e-135 486.9 396 62.9
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.3e-134 484.2 382 66.8
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 2.9e-134 483.0 371 65.0
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 2.5e-133 479.9 395 66.3
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 3.2e-133 479.6 427 61.6
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 4.2e-133 479.2 369 65.6
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 5.5e-133 478.8 375 64.0
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 8.0e-132 474.9 330 73.3
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 2.3e-131 473.4 376 65.4
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.5e-130 470.7 345 71.0
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.7e-129 467.2 345 70.4
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 5.4e-128 462.2 366 66.7
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 5.4e-128 462.2 315 74.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 1.3e-126 457.6 390 64.1
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.3e-126 457.6 317 72.6
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 8.0e-124 448.4 355 64.8
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 1.7e-121 440.7 318 71.1
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 3.3e-117 426.4 271 76.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 7.5e-114 415.2 321 64.2
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 7.3e-109 398.7 409 51.8
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 9.5e-109 398.3 357 57.1
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.2e-103 381.3 369 53.1
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 2.7e-95 353.6 348 52.6
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 4.9e-89 332.8 427 52.2
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 2.7e-87 327.0 269 59.5
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 6.8e-83 312.4 259 66.0
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 3.4e-82 310.1 187 83.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.8e-81 306.6 264 59.5
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.8e-81 306.6 360 47.5
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 1.6e-71 274.6 186 74.7
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.3e-70 271.6 362 44.2
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-69 268.1 412 39.3
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-69 268.1 412 39.3
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.3e-68 265.0 183 69.4
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.2e-64 250.4 425 35.8
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.8e-54 218.0 533 29.6
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 3.9e-54 216.9 242 49.2
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 8.7e-54 215.7 508 33.9
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.4e-48 198.4 365 38.4
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 1.1e-40 172.2 199 54.8
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 2.2e-36 157.9 198 46.0
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 3.6e-31 140.6 178 47.2
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 4.0e-22 110.5 68 83.8
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 8.2e-20 102.8 70 72.9
Rhsim08G0067700 Rhododendron simsii HOM05D001233 ORTHO05D001233 8.2e-20 102.8 137 51.1
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.1e-19 102.4 71 71.8
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.3e-17 95.5 167 37.7
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 8.5e-17 92.8 70 65.7
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.5e-16 92.0 176 35.2
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.2e-16 90.9 61 63.9
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.6e-15 88.6 181 30.9
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.8e-14 85.1 173 32.9
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 2.0e-10 71.6 53 69.8
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 1.8e-06 58.5 46 56.5


User provided reference genes

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