Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.3e-141 506.5 275 100.0
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 3.6e-104 382.1 306 71.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.9e-92 343.2 260 72.7
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.2e-91 340.5 258 70.5
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.6e-82 308.1 268 63.4
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 3.6e-80 302.4 231 70.6
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 8.9e-79 297.7 272 61.0
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.6e-78 296.2 229 69.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 4.4e-78 295.4 273 63.7
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 2.2e-77 293.1 259 66.8
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 9.2e-76 287.7 267 62.2
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 2.7e-75 286.2 273 61.2
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 2.3e-74 283.1 273 59.7
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 6.6e-74 281.6 255 61.6
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.5e-73 280.4 273 59.0
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 3.3e-73 279.3 271 59.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.6e-73 278.5 271 57.9
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.6e-70 269.6 269 56.9
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 3.4e-70 269.2 262 59.9
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.4e-70 269.2 269 61.0
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.4e-70 269.2 254 59.8
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 7.6e-70 268.1 264 57.6
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 2.2e-69 266.5 269 57.6
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 2.9e-69 266.2 272 57.4
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.9e-69 266.2 259 57.5
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.4e-68 263.1 258 64.0
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 4.2e-68 262.3 261 56.7
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.2e-67 260.8 259 58.3
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 2.7e-67 259.6 278 58.6
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 6.0e-67 258.5 256 57.0
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 7.8e-67 258.1 260 56.2
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 8.7e-66 254.6 263 52.5
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 5.6e-65 251.9 252 56.7
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 7.3e-65 251.5 273 54.2
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.6e-64 249.2 261 56.7
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 4.8e-64 248.8 270 55.9
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 4.8e-64 248.8 252 57.5
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 2.4e-63 246.5 265 55.8
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.4e-63 246.5 273 52.7
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 2.4e-63 246.5 238 59.7
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 5.3e-63 245.4 284 53.5
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 5.3e-63 245.4 253 57.7
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 6.9e-63 245.0 264 53.4
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 6.9e-63 245.0 233 60.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 2.6e-62 243.0 262 57.6
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 4.4e-62 242.3 258 58.1
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.7e-61 240.4 265 52.1
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.7e-61 240.4 253 54.9
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 4.9e-61 238.8 294 53.1
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 8.4e-61 238.0 255 57.6
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.9e-60 236.9 258 55.0
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.4e-60 236.5 278 50.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.1e-60 235.0 268 50.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 9.3e-60 234.6 264 51.5
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.2e-59 234.2 296 50.3
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 4.6e-59 232.3 262 56.9
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.0e-58 231.1 249 56.6
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.9e-58 229.2 293 49.8
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.9e-58 229.2 265 54.0
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.1e-57 227.6 275 53.8
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.3e-57 226.1 258 53.1
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.6e-57 225.3 215 60.0
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.3e-56 224.2 258 52.7
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 2.1e-56 223.4 279 51.6
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.8e-56 223.0 263 54.0
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 2.4e-55 219.9 207 58.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 2.4e-55 219.9 264 53.4
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 3.1e-55 219.5 261 54.4
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 4.0e-55 219.2 268 49.3
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.6e-54 216.5 255 52.9
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.8e-54 215.3 258 50.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.3e-53 214.2 281 49.8
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.7e-53 213.8 279 48.4
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.9e-53 213.0 264 51.5
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 8.4e-53 211.5 213 54.0
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.1e-52 211.1 264 48.5
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 5.5e-52 208.8 286 48.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 5.5e-52 208.8 304 46.4
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 7.1e-52 208.4 268 50.4
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.6e-51 207.2 273 49.5
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 6.0e-51 205.3 204 56.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 6.0e-51 205.3 204 56.9
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 7.9e-51 204.9 271 47.2
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-50 204.1 204 54.9
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.3e-50 203.4 286 46.2
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.0e-50 203.0 269 48.3
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 5.1e-50 202.2 209 54.1
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 6.7e-50 201.8 211 54.5
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-49 201.1 211 54.5
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.5e-49 199.9 283 45.9
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 4.3e-49 199.1 267 49.1
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 4.3e-49 199.1 212 54.2
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 9.6e-49 198.0 205 54.6
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.3e-48 197.6 212 52.8
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-48 197.6 206 54.4
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.3e-48 197.6 206 54.4
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.8e-48 196.4 232 53.4
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.7e-48 196.1 227 52.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.8e-48 195.7 256 44.5
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-47 194.1 211 54.0
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-47 194.1 210 53.8
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 3.1e-47 193.0 256 48.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 9.0e-47 191.4 262 48.5
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.2e-46 191.0 272 45.6
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.9e-45 186.4 252 46.8
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 4.9e-45 185.7 234 49.6
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-44 184.5 256 42.2
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 3.2e-44 183.0 286 47.6
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.0e-42 177.9 262 44.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.8e-42 177.2 102 77.5
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 3.9e-42 176.0 258 44.6
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 8.7e-42 174.9 265 40.8
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 8.7e-42 174.9 271 43.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 8.7e-42 174.9 290 42.8
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 9.6e-41 171.4 252 43.7
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.6e-40 170.6 264 43.9
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 4.8e-40 169.1 118 66.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 8.2e-40 168.3 248 45.6
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-39 167.9 253 43.1
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.4e-39 167.5 250 45.2
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.3e-39 165.6 257 44.0
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 6.9e-39 165.2 120 67.5
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.2e-38 164.5 101 73.3
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.2e-38 164.5 258 42.2
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 6.5e-37 158.7 252 43.3
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.2e-36 156.0 109 66.1
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.2e-35 154.5 260 40.8
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 7.9e-35 151.8 260 42.7
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.3e-34 151.0 262 43.1
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 5.3e-31 139.0 239 39.3
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.8e-29 132.9 243 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.5e-29 132.1 276 35.9
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.1e-28 131.3 277 35.7
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-28 131.0 102 61.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.7e-27 126.7 101 60.4
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 6.1e-27 125.6 102 58.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 6.1e-27 125.6 102 58.8
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.3e-26 123.6 278 36.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 3.9e-26 122.9 238 36.6
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-25 120.9 263 35.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.7e-24 116.3 189 38.6
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 3.1e-23 113.2 84 63.1
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 3.4e-22 109.8 85 60.0
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.0e-21 108.2 88 58.0
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.0e-21 108.2 90 57.8
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 3.8e-21 106.3 170 39.4
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 2.5e-20 103.6 289 32.2
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 5.5e-20 102.4 187 40.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.2e-19 101.3 69 69.6
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-18 97.8 88 53.4
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.7e-16 90.9 71 62.0
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 2.5e-12 77.0 83 55.4
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.2e-11 74.7 39 87.2
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.7e-11 72.8 107 42.1
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 5.7e-09 65.9 86 51.2
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 8.2e-08 62.0 338 22.2


User provided reference genes

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