Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 0.0e+00 1540.8 760 100.0
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 4.1e-198 695.7 512 73.2
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 2.3e-185 653.3 449 74.4
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.9e-181 638.6 380 82.4
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 2.3e-177 626.7 609 57.3
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.2e-176 624.4 624 56.2
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.4e-176 622.5 665 54.0
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.2e-175 620.2 506 64.4
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 4.1e-174 615.9 604 57.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.2e-173 614.4 690 52.5
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.3e-172 610.9 663 52.2
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.3e-172 610.9 664 53.5
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 2.2e-172 610.1 670 53.7
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 3.8e-172 609.4 663 50.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.5e-171 606.7 669 53.4
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.2e-170 604.4 480 66.0
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 4.7e-170 602.4 668 52.5
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.4e-169 600.9 678 51.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 1.2e-168 597.8 450 67.1
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 3.4e-168 596.3 676 51.3
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 7.5e-168 595.1 386 73.8
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 3.7e-167 592.8 450 66.2
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.1e-166 591.3 655 51.3
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 4.1e-166 589.3 639 52.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 2.2e-164 583.6 632 52.1
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 2.2e-164 583.6 386 72.3
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 5.0e-164 582.4 598 55.4
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 6.5e-164 582.0 467 63.4
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.5e-163 580.9 607 54.0
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.2e-163 579.7 450 65.3
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 3.2e-163 579.7 450 65.6
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 9.5e-163 578.2 672 50.4
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.2e-162 577.8 676 50.1
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.2e-162 577.8 450 64.7
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 2.1e-162 577.0 670 50.0
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.7e-162 576.6 371 74.1
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 8.0e-162 575.1 670 49.7
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.3e-161 573.5 399 70.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 8.8e-161 571.6 371 73.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 2.6e-160 570.1 451 64.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.2e-159 567.0 627 51.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.2e-159 567.0 656 51.1
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.8e-159 566.6 371 73.0
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 4.9e-159 565.8 580 53.8
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.1e-158 563.1 667 50.4
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 7.0e-158 562.0 665 51.6
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 7.0e-158 562.0 483 60.7
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 9.2e-158 561.6 451 63.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.0e-157 560.5 415 67.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.0e-156 558.1 692 49.6
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 2.3e-156 557.0 661 50.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 2.3e-156 557.0 676 50.3
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 6.6e-156 555.4 446 62.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.5e-155 554.3 665 51.3
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.9e-155 553.9 668 50.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.6e-154 550.8 672 48.2
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.8e-154 550.1 655 50.5
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 3.6e-154 549.7 619 52.2
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 4.7e-154 549.3 450 64.7
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.8e-153 547.4 523 56.2
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 5.2e-153 545.8 380 70.5
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.5e-152 544.3 361 72.6
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 7.5e-152 542.0 525 56.6
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.2e-151 540.4 684 46.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 5.4e-150 535.8 669 47.2
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 7.0e-150 535.4 379 68.1
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.7e-148 530.8 576 51.0
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 2.3e-148 530.4 664 47.4
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 5.0e-148 529.3 662 48.9
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 8.6e-148 528.5 662 48.0
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.1e-147 528.1 606 49.5
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.3e-147 526.6 674 46.6
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 3.3e-147 526.6 383 67.1
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.6e-147 525.8 608 49.7
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 9.5e-147 525.0 686 46.5
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.2e-146 524.6 656 47.1
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.6e-146 524.2 605 49.4
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 1.6e-146 524.2 671 46.5
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.6e-146 524.2 616 50.0
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.5e-144 517.7 607 49.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.4e-144 516.5 608 48.7
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.2e-143 513.8 369 66.7
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.9e-143 513.5 301 82.4
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 4.1e-142 509.6 653 47.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 9.2e-142 508.4 451 58.8
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.2e-138 498.0 387 63.8
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.2e-138 498.0 664 46.2
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.1e-137 495.0 421 62.2
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 9.8e-136 488.4 357 68.9
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.2e-135 487.3 585 47.9
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 2.4e-134 483.8 371 65.2
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.6e-130 471.1 461 55.3
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.9e-126 457.6 322 67.7
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 4.6e-125 453.0 364 62.1
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.1e-122 444.1 280 75.0
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 5.8e-120 436.0 372 57.5
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.9e-115 421.0 319 65.5
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 2.5e-115 420.6 413 52.1
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 3.8e-111 406.8 570 45.3
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 8.4e-111 405.6 381 55.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 4.2e-110 403.3 357 56.6
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.6e-53 215.3 197 55.3
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.2e-46 190.7 103 86.4
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.7e-45 187.2 103 85.4
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-43 182.6 103 82.5
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.7e-42 177.6 99 82.8
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.0e-31 142.9 83 79.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.9e-31 141.0 83 79.5
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.5e-27 129.0 346 31.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.1e-14 86.3 330 25.8
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 6.2e-13 80.5 46 78.3
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.0e-12 77.8 183 32.2
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-11 76.3 68 60.3
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.5e-08 64.7 65 56.9


User provided reference genes

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