Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 2167.5 1117 100.0
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1735.3 1128 82.1
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1635.5 1127 77.1
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1608.6 1127 75.5
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1532.3 1124 71.5
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1452.6 1121 66.9
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1450.3 1125 66.9
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1449.9 1127 67.7
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1449.1 1125 67.0
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1445.3 1121 67.8
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1442.9 1121 66.5
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1436.8 1128 67.0
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1435.6 1127 66.5
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1435.2 1123 66.2
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1431.4 1123 66.7
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1429.8 1123 65.9
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1422.9 1121 66.3
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1422.9 1121 66.3
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1421.8 1136 66.1
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1421.4 1123 66.3
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1421.0 1123 65.6
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1419.1 985 75.2
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1414.1 1121 66.8
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1411.4 1125 65.6
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1409.4 1073 69.5
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1406.0 1137 65.6
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1404.0 1124 65.7
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1401.7 1123 65.4
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1396.7 1123 64.6
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1390.9 1121 64.4
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1389.4 1123 64.4
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1385.2 1121 64.1
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1384.8 1119 64.8
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1382.5 1125 64.8
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1379.4 1123 63.8
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1377.1 1128 64.0
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1377.1 1124 64.1
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1375.9 1124 64.2
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1373.6 1123 64.3
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1356.7 1162 62.5
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1356.3 1121 63.3
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1345.1 1127 62.8
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1343.2 1124 62.0
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1339.7 1127 62.9
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1338.2 1138 63.6
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1337.0 1127 63.2
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1335.5 1125 63.1
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1334.7 1123 62.7
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1333.2 1124 61.4
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1331.2 1127 63.0
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1327.4 1136 63.3
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1325.1 1124 61.3
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 1324.7 1165 60.7
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1320.4 1122 61.9
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1320.1 1055 65.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1318.5 1125 61.3
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1315.1 1124 60.3
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1310.0 1122 61.8
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1308.5 1098 63.0
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1307.4 1124 60.1
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1305.8 1127 61.8
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1299.6 1157 59.5
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1298.1 1201 58.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1297.3 1124 61.7
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1297.0 1124 60.0
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1293.9 1130 60.7
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1292.7 1166 59.4
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1286.2 1127 60.9
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1281.2 1155 60.2
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1278.5 1083 63.0
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1278.1 1100 61.3
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1274.2 1127 60.4
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1263.8 1127 60.5
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1261.5 1126 60.6
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1256.5 1125 58.9
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1235.3 1122 58.2
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1233.0 1093 60.1
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1231.5 1123 58.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1227.6 1132 58.0
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 0.0e+00 1223.4 1128 59.3
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1212.2 1114 58.5
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1200.7 1158 56.6
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 0.0e+00 1179.9 1005 61.8
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 0.0e+00 1179.1 1154 55.5
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 0.0e+00 1161.7 984 60.5
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 0.0e+00 1152.1 1123 55.0
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 0.0e+00 1090.9 994 58.0
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 2.1e-283 979.5 1121 49.2
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 3.0e-274 949.1 1146 47.3
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 5.1e-274 948.3 865 59.5
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 1.4e-250 870.5 1016 49.2
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 2.8e-240 836.3 849 55.0
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 1.7e-224 783.9 638 62.7
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 4.1e-223 779.2 791 54.2
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 7.7e-222 775.0 635 62.4
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 8.6e-221 771.5 717 58.6
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 2.9e-208 729.9 1138 37.1
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 4.1e-207 726.1 1154 37.2
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 8.7e-181 638.6 754 46.3
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 1.5e-164 584.7 413 71.7
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 2.2e-152 544.3 1134 33.7
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 1.3e-149 535.0 687 47.0
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 2.2e-147 527.7 681 46.5
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 2.3e-141 507.7 370 71.4
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 6.3e-139 499.6 500 53.4
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 2.4e-138 497.7 500 53.2
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 5.7e-132 476.5 1112 32.6
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 9.7e-132 475.7 416 57.9
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 1.7e-115 421.8 447 53.7
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 3.7e-115 420.6 1129 28.7
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.5e-89 334.3 347 51.3
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 6.6e-88 330.1 200 80.0
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 1.0e-80 306.2 1126 25.9
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 4.3e-79 300.8 353 48.4
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 4.9e-75 287.3 337 49.0
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.3e-64 252.7 191 68.6
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 9.6e-55 219.9 1055 24.6
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-50 206.5 138 68.8
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.7e-49 201.8 333 42.0
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 1.9e-47 195.7 187 52.9
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 4.3e-47 194.5 149 69.1
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 6.2e-46 190.7 134 67.2
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 3.1e-45 188.3 173 58.4
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 1.8e-40 172.6 230 47.4
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.9e-31 142.5 87 77.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-30 139.4 131 60.3
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 4.1e-29 134.8 129 55.8
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.3e-19 103.2 72 66.7
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 1.3e-19 103.2 73 75.3
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 4.2e-18 98.2 68 73.5
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 1.6e-17 96.3 77 64.9
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 1.4e-16 93.2 60 75.0
CDE04G0426 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 2.3e-16 92.4 65 67.7
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 6.7e-16 90.9 59 72.9
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.0e-15 89.4 57 73.7
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.0e-15 89.4 87 56.3
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 4.4e-15 88.2 102 47.1
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 1.7e-14 86.3 133 38.3
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 8.2e-14 84.0 136 39.0
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 1.0e-11 77.0 140 37.9
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 1.0e-11 77.0 55 70.9
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 1.9e-10 72.8 41 80.5
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 3.2e-10 72.0 68 52.9
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 3.6e-09 68.6 182 29.1
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 4.7e-09 68.2 172 29.7
Ca_05116_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 8.0e-09 67.4 43 74.4
C07p18980 Brassica napus HOM05D001046 ORTHO05D042866 1.8e-08 66.2 45 68.9
BolC7t42408H Brassica oleracea HOM05D001046 ORTHO05D042866 1.8e-08 66.2 45 68.9
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 4.0e-08 65.1 44 68.2
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 3.3e-07 62.0 159 27.0
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 3.3e-07 62.0 47 63.8
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 4.4e-07 61.6 73 45.2
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 7.5e-07 60.8 159 26.4
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 7.5e-07 60.8 173 26.0
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 9.7e-07 60.5 167 29.3
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 9.7e-07 60.5 77 44.2
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 9.7e-07 60.5 183 27.3
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 1.3e-06 60.1 119 38.7
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.7e-06 59.7 178 28.1
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 2.2e-06 59.3 54 61.1
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 2.8e-06 58.9 148 27.0
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 2.8e-06 58.9 143 28.0
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 2.8e-06 58.9 180 27.2
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 2.8e-06 58.9 175 28.0
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 3.7e-06 58.5 148 26.4
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 3.7e-06 58.5 143 28.0
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 3.7e-06 58.5 148 27.0
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 3.7e-06 58.5 143 28.0
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 3.7e-06 58.5 148 27.0
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 3.7e-06 58.5 160 25.0
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 4.8e-06 58.2 148 27.0
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 4.8e-06 58.2 177 28.2
Gohir.A01G165300 Gossypium hirsutum HOM05D001046 ORTHO05D005883 6.3e-06 57.8 69 49.3
Lj5g0008258 Lotus japonicus HOM05D001046 ORTHO05D005883 8.2e-06 57.4 37 78.4


User provided reference genes

Program Settings