Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.0e-241 838.2 455 100.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.8e-178 628.2 461 76.6
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.6e-136 489.6 467 61.9
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.7e-125 453.0 461 59.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 3.7e-106 389.4 469 52.7
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.0e-104 383.6 465 49.2
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.7e-98 364.0 465 48.4
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.7e-96 356.7 455 50.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.1e-94 351.3 464 52.4
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.8e-92 342.0 462 49.4
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.2e-91 341.3 507 49.3
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.5e-91 340.9 451 48.3
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.4e-89 333.6 453 47.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.4e-89 333.6 452 46.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 2.4e-89 333.6 460 48.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 7.1e-89 332.0 461 46.2
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 9.2e-89 331.6 457 46.8
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.3e-87 327.8 463 49.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-87 327.8 461 45.8
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.3e-87 327.0 458 49.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.1e-86 324.7 454 47.1
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 7.3e-86 322.0 462 49.8
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 8.1e-85 318.5 451 45.2
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 4.0e-84 316.2 471 45.2
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-83 314.7 459 44.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 2.0e-83 313.9 466 48.3
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.0e-83 313.9 455 44.6
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 9.9e-83 311.6 467 45.8
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 4.9e-82 309.3 472 44.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.1e-81 308.1 463 43.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.2e-81 306.6 469 46.3
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 7.1e-81 305.4 463 47.1
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 4.6e-80 302.8 459 43.8
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.0e-79 301.6 464 44.0
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.1e-79 299.3 461 48.6
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.5e-78 297.0 462 48.1
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-77 294.3 461 43.6
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.1e-77 293.9 462 47.8
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.4e-76 290.4 460 43.7
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.1e-76 290.0 460 43.7
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 1.5e-75 287.7 461 43.4
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-75 287.3 461 43.6
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.3e-74 284.6 453 43.0
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 3.8e-74 283.1 451 43.2
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.2e-73 280.0 501 40.9
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.1e-73 278.9 502 40.6
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 2.1e-72 277.3 400 47.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.5e-70 271.2 474 42.6
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.1e-69 267.3 459 43.4
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.8e-69 266.9 501 42.3
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.1e-68 265.0 471 39.9
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 9.0e-68 261.9 450 40.7
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 3.8e-66 256.5 461 39.5
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 8.4e-66 255.4 459 39.2
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.4e-65 254.6 465 39.6
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.9e-65 254.2 465 41.9
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.9e-65 254.2 483 40.8
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-65 253.1 376 44.4
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 5.4e-65 252.7 468 42.5
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 7.1e-65 252.3 457 42.5
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.3e-65 251.9 465 41.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.6e-64 251.1 473 40.4
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.5e-64 250.0 417 42.9
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 3.5e-64 250.0 450 38.7
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.8e-63 247.7 461 41.4
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.3e-63 247.3 459 40.7
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.9e-63 246.5 463 41.0
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.9e-63 246.5 463 39.1
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.1e-62 245.0 460 42.8
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.5e-62 244.6 480 36.5
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.9e-62 244.2 464 41.4
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.3e-62 243.4 492 38.8
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.1e-61 238.8 448 38.6
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 8.1e-61 238.8 463 37.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 8.1e-61 238.8 460 41.7
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 8.1e-61 238.8 465 40.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.4e-60 237.3 470 37.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.0e-60 236.5 458 39.7
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.5e-59 234.6 466 40.3
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-59 233.8 466 40.1
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 7.6e-59 232.3 460 39.8
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 3.8e-58 229.9 465 38.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 4.9e-58 229.6 460 39.3
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 6.4e-58 229.2 459 37.9
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 3.2e-57 226.9 468 39.1
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 4.2e-57 226.5 451 36.8
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.5e-57 226.1 450 38.2
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 9.3e-57 225.3 468 39.3
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-56 224.9 464 38.6
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.7e-56 223.8 470 37.7
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.0e-56 222.6 457 39.2
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 7.9e-56 222.2 461 38.8
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.0e-55 221.9 475 36.8
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.8e-55 221.1 459 36.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.0e-55 220.3 399 40.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 9.6e-54 215.3 471 37.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.6e-53 214.5 452 38.3
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.8e-53 213.8 462 37.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 2.8e-53 213.8 463 37.8
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 3.7e-53 213.4 451 36.1
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.2e-53 212.2 452 38.3
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.1e-52 211.8 481 37.0
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-52 211.5 450 35.1
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.1e-52 210.3 450 35.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.3e-52 209.5 458 36.7
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.3e-52 209.5 455 37.4
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.2e-51 208.4 317 43.8
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.5e-51 208.0 456 37.1
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.5e-51 208.0 459 36.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 7.6e-51 205.7 429 37.5
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.0e-50 205.3 445 35.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.3e-50 204.9 450 36.9
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.4e-49 201.4 451 35.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.2e-49 199.9 450 38.0
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 7.1e-49 199.1 461 36.4
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.1e-48 197.6 452 35.6
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.0e-47 195.3 451 34.8
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.0e-47 193.7 471 36.3
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.9e-47 193.4 467 34.3
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 5.1e-47 193.0 449 34.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.3e-45 186.0 566 32.7
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.1e-44 185.3 242 47.9
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 4.1e-44 183.3 463 35.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 6.9e-44 182.6 448 37.9
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.4e-43 180.3 461 34.9
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.7e-42 177.9 474 33.1
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.4e-41 174.9 443 36.1
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.9e-41 174.5 446 33.6
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-41 173.3 464 32.5
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.5e-41 172.9 321 39.6
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 6.1e-40 169.5 460 32.8
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-39 168.7 412 35.0
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 1.4e-39 168.3 463 33.5
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.9e-39 166.8 321 39.3
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.9e-39 166.8 465 34.0
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.9e-39 166.8 386 38.1
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.8e-39 165.6 450 33.1
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.1e-38 165.2 456 34.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 2.0e-38 164.5 318 38.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.7e-37 161.4 459 32.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-37 161.0 318 37.7
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.8e-37 160.6 284 43.3
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.1e-36 158.7 460 32.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.4e-36 158.3 471 33.3
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.1e-36 157.1 461 32.8
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 9.1e-36 155.6 467 30.8
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.2e-35 155.2 455 33.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.5e-35 153.3 459 32.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 5.9e-35 152.9 451 32.8
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 8.5e-34 149.1 468 32.3
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.4e-33 148.3 321 37.1
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.6e-32 143.7 456 31.8
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.3e-31 141.0 453 32.0
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 5.1e-31 139.8 385 32.7
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 8.8e-31 139.0 380 33.9
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.1e-30 138.7 457 31.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 4.4e-30 136.7 456 30.9
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.4e-30 136.0 283 39.2
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.8e-29 134.0 448 30.8
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.8e-29 133.3 352 34.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.1e-28 132.1 322 34.2
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 4.1e-28 130.2 436 29.6
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.6e-24 118.2 449 30.7
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 3.6e-24 117.1 470 29.1
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.4e-23 115.2 293 35.5
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.4e-20 105.1 464 27.2
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.5e-19 100.5 395 28.9
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 5.9e-19 99.8 168 42.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 3.6e-16 90.5 217 32.7
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 3.6e-16 90.5 491 26.5
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.0e-15 89.0 303 29.0
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 4.4e-14 83.6 445 25.6
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.7e-14 82.4 172 33.7
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 1.8e-12 78.2 168 41.7
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.6e-11 75.1 218 30.7
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.7e-11 72.8 150 37.3
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.2e-10 71.2 98 50.0
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 5.5e-09 66.6 149 36.2
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.4e-07 62.0 195 33.8
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-07 62.0 140 36.4
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 8.8e-07 59.3 87 47.1
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-06 58.9 87 47.1
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.2e-06 58.9 224 29.5
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 1.5e-06 58.5 87 47.1
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 2.0e-06 58.2 90 43.3
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-06 57.8 267 25.5
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.4e-06 57.4 461 22.3


User provided reference genes

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