Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 0.0e+00 1432.5 708 100.0
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 0.0e+00 1118.2 718 79.8
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.2e-244 850.1 737 62.8
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.5e-202 710.3 734 56.4
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 1.8e-195 686.8 737 54.4
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.4e-168 597.4 736 48.5
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.1e-144 518.1 704 46.2
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 9.2e-136 488.4 735 43.3
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 1.7e-134 484.2 730 42.3
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 1.0e-131 474.9 746 42.1
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 7.5e-130 468.8 768 40.5
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 9.5e-125 451.8 732 41.0
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 1.8e-123 447.6 803 39.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.2e-122 444.9 740 40.9
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 1.3e-121 441.4 749 39.5
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 2.3e-118 430.6 736 40.4
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 1.1e-117 428.3 732 40.4
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 1.9e-117 427.6 765 38.2
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 5.2e-115 419.5 731 40.5
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 6.8e-115 419.1 748 39.0
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 1.2e-114 418.3 766 38.6
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 1.5e-114 417.9 731 39.5
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 7.6e-114 415.6 504 50.8
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 1.7e-113 414.5 745 39.2
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 4.9e-113 412.9 736 39.7
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 1.1e-112 411.8 605 44.3
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 7.1e-112 409.1 761 38.1
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.2e-111 408.3 752 38.6
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 4.6e-111 406.4 760 38.3
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 6.0e-111 406.0 753 38.5
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 7.8e-111 405.6 736 39.3
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.0e-110 405.2 735 39.5
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.0e-110 403.7 734 37.9
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.1e-109 401.7 756 38.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.9e-109 401.0 773 36.9
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 6.2e-108 396.0 750 38.0
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 8.1e-108 395.6 741 38.3
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.8e-107 394.4 735 38.2
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.8e-107 394.4 735 38.2
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.4e-107 394.0 736 38.2
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 6.9e-107 392.5 735 38.0
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 1.7e-105 387.9 731 36.4
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.8e-105 386.7 738 38.6
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 3.8e-105 386.7 754 38.1
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 7.1e-104 382.5 739 37.5
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 2.1e-103 380.9 676 39.9
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 6.0e-103 379.4 735 35.6
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 2.3e-102 377.5 741 37.5
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.5e-101 374.8 737 37.4
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 3.6e-100 370.2 863 32.3
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.4e-99 368.2 737 36.9
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 1.2e-98 365.2 818 32.9
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.6e-98 364.0 753 36.8
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.7e-97 361.3 799 34.2
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.9e-96 357.8 837 32.9
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 2.4e-96 357.5 826 33.4
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 1.2e-95 355.1 833 32.2
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.3e-94 351.7 763 33.0
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 3.0e-94 350.5 763 35.6
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 2.8e-92 344.0 797 32.9
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 2.8e-92 344.0 811 33.0
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 3.7e-92 343.6 827 31.9
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.6e-90 337.4 631 38.4
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 3.8e-89 333.6 796 33.7
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 1.9e-88 331.3 769 34.2
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 3.2e-88 330.5 744 33.7
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 4.2e-88 330.1 780 34.1
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.5e-87 327.0 761 31.9
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 1.3e-86 325.1 779 32.3
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 1.8e-86 324.7 746 34.6
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 3.3e-85 320.5 842 31.9
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 1.1e-83 315.5 782 31.7
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.4e-83 315.1 752 34.8
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 3.1e-83 313.9 806 30.9
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 2.0e-82 311.2 766 32.1
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 2.2e-81 307.8 830 31.6
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 3.0e-78 297.4 788 31.5
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 3.9e-78 297.0 848 30.2
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 8.7e-78 295.8 814 30.7
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 2.8e-76 290.8 898 29.2
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 3.7e-76 290.4 830 30.5
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 4.8e-76 290.0 875 29.5
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 8.2e-76 289.3 880 29.2
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 1.4e-75 288.5 461 38.4
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 7.6e-74 282.7 420 39.5
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 9.3e-72 275.8 787 31.6
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 9.3e-72 275.8 621 33.2
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 2.2e-68 264.6 843 27.8
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 2.8e-68 264.2 854 30.1
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.2e-66 258.8 508 37.6
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 2.2e-65 254.6 795 30.1
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.0e-62 245.7 698 31.7
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 8.8e-62 242.7 775 29.3
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.8e-59 235.0 761 29.0
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 5.3e-59 233.4 761 29.2
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 4.5e-58 230.3 730 28.1
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 7.7e-58 229.6 745 29.9
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 5.0e-57 226.9 813 28.0
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.4e-56 225.3 777 29.0
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 3.3e-53 214.2 803 28.0
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 8.2e-52 209.5 790 28.1
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 8.2e-52 209.5 774 28.0
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 1.4e-51 208.8 436 34.4
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 1.8e-51 208.4 434 35.0
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 3.1e-51 207.6 414 36.2
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 9.1e-51 206.1 790 27.1
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 2.6e-50 204.5 799 27.8
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 5.9e-50 203.4 773 27.4
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 5.9e-50 203.4 468 34.2
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 2.2e-49 201.4 776 29.1
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 3.8e-49 200.7 800 26.9
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 1.5e-48 198.7 800 27.2
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 9.4e-48 196.1 228 49.1
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.6e-47 194.1 768 27.3
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 6.1e-47 193.4 768 27.3
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 1.4e-46 192.2 757 27.1
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 9.7e-45 186.0 201 48.3
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 2.2e-44 184.9 804 27.9
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 1.1e-43 182.6 169 57.4
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 1.0e-41 176.0 810 26.5
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 8.8e-38 162.9 644 27.0
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 2.2e-36 158.3 450 29.8
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.8e-35 155.2 129 60.5
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.4e-29 134.0 99 64.6
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 3.5e-26 124.4 247 33.2
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 3.2e-19 101.3 215 29.8
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 3.0e-17 94.7 82 53.7
BcaC04g19065 Brassica carinata HOM05D004735 ORTHO05D005243 5.0e-17 94.0 408 27.0
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.1e-16 92.8 292 26.7
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 2.1e-15 88.6 101 41.6
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 4.7e-15 87.4 104 48.1
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 3.1e-14 84.7 255 29.4
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 2.6e-13 81.6 81 46.9
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 9.8e-13 79.7 81 45.7
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 5.4e-11 73.9 101 38.6
Oeu062522.1 Olea europaea HOM05D004735 ORTHO05D005243 6.6e-09 67.0 161 34.2
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.5e-08 65.1 74 50.0


User provided reference genes

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