Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.8e-160 568.5 289 100.0
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.7e-139 498.0 288 88.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.2e-139 497.7 289 88.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.6e-132 474.6 289 83.7
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.8e-129 464.5 291 81.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.7e-110 402.5 288 75.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.9e-106 387.9 287 71.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 9.0e-106 387.5 286 72.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 9.9e-105 384.0 286 70.6
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.8e-104 382.1 291 71.1
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.9e-103 379.8 279 72.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.9e-103 379.8 310 66.8
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.2e-103 378.6 281 70.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 9.3e-103 377.5 286 70.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.2e-102 377.1 281 70.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.2e-102 377.1 286 68.2
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.5e-102 375.6 286 68.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.0e-102 374.8 285 69.1
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.0e-101 374.0 286 69.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.0e-101 374.0 237 80.2
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-101 374.0 306 66.0
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.3e-101 373.6 285 68.4
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.0e-101 372.5 281 69.4
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.0e-101 372.5 286 68.5
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.7e-101 370.9 311 64.6
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.1e-100 370.5 230 80.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.3e-100 369.0 279 70.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 4.3e-100 368.6 290 66.9
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 5.6e-100 368.2 279 69.2
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 7.4e-100 367.9 281 68.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 7.4e-100 367.9 249 74.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 9.6e-100 367.5 287 66.9
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 9.6e-100 367.5 258 74.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.6e-99 366.7 230 80.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-99 366.7 285 68.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.6e-99 366.7 253 74.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.1e-99 366.3 229 80.3
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.8e-99 365.9 238 78.2
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.7e-99 365.5 288 69.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.7e-99 365.5 241 76.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.8e-99 365.2 246 76.4
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.8e-99 365.2 282 68.4
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.8e-99 365.2 253 75.1
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 8.2e-99 364.4 263 71.5
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.2e-99 364.4 287 68.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.2e-99 364.4 242 77.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.4e-98 363.6 282 68.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.8e-98 363.2 281 69.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.4e-98 362.8 237 76.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 3.1e-98 362.5 229 78.2
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 5.3e-98 361.7 285 69.8
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 5.3e-98 361.7 229 79.0
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 5.3e-98 361.7 269 71.0
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 6.9e-98 361.3 287 66.2
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 9.0e-98 360.9 277 70.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.0e-98 360.9 229 79.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.2e-97 360.5 237 76.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.6e-97 359.4 237 75.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.5e-97 358.6 241 74.3
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 5.8e-97 358.2 289 65.7
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 7.6e-97 357.8 283 68.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.7e-96 356.7 247 74.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.9e-96 355.9 229 76.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 6.5e-96 354.8 238 75.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 6.5e-96 354.8 247 74.1
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 8.4e-96 354.4 237 75.9
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.4e-96 354.4 253 72.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.4e-96 354.4 253 71.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-95 353.6 236 74.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.4e-95 353.6 236 74.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.9e-95 353.2 237 74.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-95 353.2 253 71.5
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.9e-95 353.2 286 68.2
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.5e-95 352.8 255 71.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.5e-95 352.8 229 78.2
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 3.2e-95 352.4 235 75.3
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 3.2e-95 352.4 285 67.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 3.2e-95 352.4 237 75.1
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 5.5e-95 351.7 252 71.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.5e-95 351.7 252 72.2
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 5.5e-95 351.7 229 77.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 7.1e-95 351.3 252 71.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 9.3e-95 350.9 237 73.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 9.3e-95 350.9 237 73.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 9.3e-95 350.9 237 73.8
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.2e-94 350.5 262 71.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-94 350.1 229 76.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.0e-94 348.2 281 65.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 3.9e-93 345.5 286 65.4
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.3e-92 342.0 222 77.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 5.7e-92 341.7 234 74.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 9.7e-92 340.9 223 76.7
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-91 339.7 241 72.2
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.2e-91 339.7 241 72.2
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.7e-91 339.0 281 65.1
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.1e-90 335.5 287 63.4
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 6.9e-90 334.7 229 73.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.2e-89 334.0 260 68.1
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.0e-89 333.2 261 67.0
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.6e-89 332.8 230 71.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.7e-89 331.3 231 71.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.9e-88 329.3 238 70.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.8e-88 328.9 228 71.9
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.8e-88 328.9 262 67.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 9.4e-87 324.3 230 68.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.9e-86 321.2 253 68.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 8.8e-85 317.8 235 69.4
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.3e-83 313.9 257 64.6
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.3e-83 311.6 200 77.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.8e-82 310.1 233 68.2
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.4e-82 309.7 201 75.6
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.1e-82 309.3 192 81.8
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.1e-82 309.3 282 57.8
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.6e-81 306.2 195 81.0
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.5e-81 305.4 214 70.1
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.3e-80 303.9 200 73.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.2e-79 299.3 199 75.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.6e-78 297.0 199 75.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.9e-77 292.4 230 67.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.1e-77 292.0 252 61.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.6e-76 289.7 200 75.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 3.1e-74 282.7 225 66.2
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-73 280.8 199 72.4
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-73 279.6 231 66.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 5.9e-73 278.5 230 65.2
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.2e-72 276.6 265 55.8
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 9.4e-71 271.2 199 69.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.1e-70 270.0 217 66.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.9e-69 265.8 187 75.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.4e-68 262.3 257 56.0
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 5.7e-68 261.9 243 56.0
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.7e-68 261.9 170 77.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.7e-67 260.4 241 58.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 8.5e-64 248.1 229 56.3
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 6.8e-61 238.4 236 53.0
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.9e-55 220.3 207 59.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.8e-53 211.5 253 48.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.7e-52 208.8 146 73.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.2e-49 201.1 145 68.3
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.7e-49 199.9 146 70.5
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.5e-47 192.2 158 67.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-43 180.6 147 65.3
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.1e-42 176.0 147 64.6
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-39 167.5 131 67.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-34 149.8 107 71.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-34 149.8 107 71.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.0e-32 144.8 123 61.0
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.7e-32 144.1 116 65.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 5.2e-29 132.5 157 49.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.9e-27 126.7 74 83.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.1e-26 124.8 74 82.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-26 124.4 74 82.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-26 124.0 74 81.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.9e-26 124.0 74 82.4
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-23 114.0 71 80.3
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.1e-22 110.5 194 35.1
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 4.9e-19 99.4 64 81.2
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.4e-18 97.8 91 57.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-16 90.9 63 79.4
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.6e-16 88.6 64 70.3
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-15 88.2 66 72.7
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.6e-12 77.0 44 84.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 4.9e-11 72.8 46 82.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.4e-11 72.4 64 60.9
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.9e-10 70.9 77 53.2
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.3e-10 68.6 64 57.8
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.6e-09 67.8 44 72.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 8.7e-08 62.0 62 53.2
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.6e-06 57.8 37 64.9
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.6e-06 57.8 37 64.9
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.6e-06 56.6 173 30.1
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 8.1e-06 55.5 42 71.4


User provided reference genes

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