Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 5.3e-79 297.7 163 100.0
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 4.1e-31 138.7 168 52.4
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 4.4e-25 118.6 150 51.3
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 5.6e-20 101.7 115 51.3
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 4.9e-16 88.6 114 47.4
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 1.1e-15 87.4 98 55.1
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.4e-15 87.0 99 42.4
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 1.4e-15 87.0 51 76.5
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 1.4e-15 87.0 108 43.5
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 1.9e-15 86.7 36 94.4
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 1.9e-15 86.7 36 94.4
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.9e-15 86.7 124 41.9
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 1.2e-14 84.0 65 58.5
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 1.6e-14 83.6 38 84.2
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 1.6e-14 83.6 49 71.4
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 1.6e-14 83.6 46 71.7
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 2.0e-14 83.2 115 47.8
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 2.0e-14 83.2 36 86.1
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 2.0e-14 83.2 36 86.1
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 2.7e-14 82.8 38 84.2
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 2.7e-14 82.8 48 79.2
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 2.7e-14 82.8 46 71.7
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 2.7e-14 82.8 44 75.0
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 2.7e-14 82.8 36 86.1
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 3.5e-14 82.4 42 83.3
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 3.5e-14 82.4 36 88.9
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 3.5e-14 82.4 36 88.9
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 3.5e-14 82.4 39 82.1
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 4.6e-14 82.0 43 79.1
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 6.0e-14 81.6 49 67.3
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 7.8e-14 81.3 92 52.2
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 1.0e-13 80.9 36 86.1
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 1.3e-13 80.5 101 41.6
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 1.3e-13 80.5 161 37.3
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.3e-13 80.5 93 45.2
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 1.3e-13 80.5 49 69.4
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.3e-13 80.5 133 41.4
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 1.3e-13 80.5 43 69.8
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 1.3e-13 80.5 92 52.2
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 1.7e-13 80.1 40 72.5
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 1.7e-13 80.1 33 90.9
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 2.3e-13 79.7 42 73.8
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 2.3e-13 79.7 37 83.8
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 2.3e-13 79.7 45 75.6
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 3.0e-13 79.3 36 86.1
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 3.0e-13 79.3 36 86.1
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 3.0e-13 79.3 36 86.1
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 3.0e-13 79.3 32 96.9
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 3.0e-13 79.3 40 85.0
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 3.0e-13 79.3 39 79.5
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 3.9e-13 79.0 46 67.4
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 5.0e-13 78.6 36 83.3
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 6.6e-13 78.2 49 61.2
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 8.6e-13 77.8 39 76.9
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 8.6e-13 77.8 120 47.5
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 1.1e-12 77.4 102 45.1
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 1.1e-12 77.4 44 77.3
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 1.5e-12 77.0 33 87.9
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 1.5e-12 77.0 39 74.4
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 1.5e-12 77.0 41 73.2
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 2.5e-12 76.3 120 38.3
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 2.5e-12 76.3 31 93.5
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 4.3e-12 75.5 39 71.8
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 5.6e-12 75.1 39 76.9
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 5.6e-12 75.1 47 66.0
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 7.3e-12 74.7 36 80.6
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 7.3e-12 74.7 39 69.2
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 7.3e-12 74.7 48 64.6
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 9.5e-12 74.3 44 72.7
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 1.2e-11 73.9 29 96.6
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 1.6e-11 73.6 106 42.5
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 1.6e-11 73.6 106 42.5
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 1.6e-11 73.6 106 42.5
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 2.1e-11 73.2 41 78.0
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 2.1e-11 73.2 35 80.0
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 2.1e-11 73.2 35 80.0
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 2.1e-11 73.2 35 80.0
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 2.8e-11 72.8 41 73.2
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 2.8e-11 72.8 31 87.1
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 3.6e-11 72.4 38 78.9
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 3.6e-11 72.4 44 72.7
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 3.6e-11 72.4 34 79.4
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 4.7e-11 72.0 37 73.0
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 4.7e-11 72.0 31 90.3
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 6.2e-11 71.6 32 81.2
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 8.0e-11 71.2 43 72.1
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 8.0e-11 71.2 31 83.9
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 8.0e-11 71.2 31 83.9
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 1.1e-10 70.9 43 65.1
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 1.8e-10 70.1 41 65.9
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 1.8e-10 70.1 33 78.8
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 1.8e-10 70.1 33 78.8
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 1.8e-10 70.1 44 65.9
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 2.3e-10 69.7 34 79.4
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 3.1e-10 69.3 63 47.6
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 3.1e-10 69.3 41 65.9
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 3.1e-10 69.3 44 65.9
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 3.1e-10 69.3 37 67.6
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 3.1e-10 69.3 31 83.9
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 6.8e-10 68.2 30 83.3
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 8.9e-10 67.8 35 71.4
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 1.2e-09 67.4 39 71.8
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 4.4e-09 65.5 27 85.2
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 3.7e-08 62.4 33 72.7
AL6G28340 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 1.6e-06 57.0 38 63.2


User provided reference genes

Program Settings