Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 4.2e-105 384.8 208 100.0
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 3.6e-80 302.0 206 80.6
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 8.8e-79 297.4 198 83.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.4e-76 289.3 196 81.6
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 3.8e-74 282.0 192 78.1
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 6.5e-74 281.2 203 75.4
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 8.5e-74 280.8 206 72.8
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.5e-73 279.3 192 77.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.5e-73 278.1 195 76.9
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.6e-72 275.4 197 74.1
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 8.0e-72 274.2 197 77.2
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.0e-71 273.9 193 73.6
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.0e-71 273.9 202 72.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 1.0e-71 273.9 254 66.9
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.8e-71 273.1 202 74.8
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.8e-71 273.1 204 71.6
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.0e-71 272.3 193 73.1
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 8.8e-71 270.8 206 71.4
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.8e-71 270.8 209 70.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.5e-70 270.0 204 71.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.5e-70 270.0 204 70.1
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.0e-70 269.6 195 73.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.0e-70 269.6 218 69.7
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.6e-70 269.2 207 72.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.4e-70 268.9 204 70.6
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.4e-70 268.9 202 73.8
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 4.4e-70 268.5 191 75.4
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.4e-70 268.5 190 73.2
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 5.7e-70 268.1 185 77.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 7.5e-70 267.7 194 73.7
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 7.5e-70 267.7 205 71.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.3e-69 266.9 197 72.6
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.3e-69 266.9 204 70.1
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.3e-69 266.9 208 68.3
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.2e-69 266.2 190 72.1
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.8e-69 265.0 204 70.1
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 6.3e-69 264.6 192 70.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.3e-69 264.2 206 71.8
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.1e-68 263.8 199 71.4
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 4.1e-68 261.9 206 68.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 9.1e-68 260.8 206 71.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.2e-67 260.4 206 69.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.6e-67 260.0 205 68.8
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.6e-67 260.0 209 71.3
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.0e-67 259.6 196 72.4
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 3.5e-67 258.8 204 67.2
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 5.9e-67 258.1 184 70.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.3e-66 256.9 186 68.8
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.3e-66 256.9 193 69.9
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.3e-66 256.9 206 69.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.9e-66 255.8 206 65.5
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.9e-66 255.8 194 71.1
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 5.0e-66 255.0 205 66.8
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 8.6e-66 254.2 187 69.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 8.6e-66 254.2 205 67.3
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 8.6e-66 254.2 187 73.3
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.1e-65 253.8 187 69.0
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.9e-65 253.1 206 65.0
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.9e-65 253.1 182 70.9
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 5.5e-65 251.5 193 68.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.5e-65 251.5 185 73.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.6e-64 250.0 210 64.8
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.1e-64 249.6 190 71.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 4.7e-64 248.4 187 67.4
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 6.1e-64 248.1 231 61.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.0e-64 247.7 236 61.0
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.8e-63 246.5 235 60.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.0e-63 245.7 192 68.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.9e-63 244.2 187 68.4
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.7e-62 241.5 193 67.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 7.5e-62 241.1 184 67.9
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.8e-61 239.2 185 68.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 3.7e-61 238.8 179 72.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.4e-60 236.1 185 66.5
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.4e-60 236.1 185 66.5
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.4e-60 236.1 185 66.5
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 7.0e-60 234.6 184 67.4
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 9.2e-60 234.2 201 61.7
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 3.5e-59 232.3 189 66.7
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.8e-59 231.1 185 67.6
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.9e-58 229.2 197 65.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 6.6e-58 228.0 185 65.4
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 6.6e-58 228.0 185 65.4
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 6.6e-58 228.0 185 65.4
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 8.6e-58 227.6 211 63.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.5e-57 226.1 200 63.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.3e-57 225.3 192 63.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 4.3e-57 225.3 192 65.6
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.2e-56 223.8 180 64.4
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.2e-56 223.8 180 64.4
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-56 223.8 150 80.7
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.8e-56 222.6 150 80.7
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 4.7e-56 221.9 200 61.5
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 5.2e-55 218.4 207 58.5
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.8e-55 218.0 192 60.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 8.9e-55 217.6 206 61.2
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.4e-54 215.7 211 61.1
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.2e-53 213.0 144 72.2
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 6.4e-53 211.5 177 63.3
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.9e-52 209.9 139 79.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 7.0e-52 208.0 161 67.1
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.2e-51 207.2 151 69.5
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.6e-51 206.8 182 60.4
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.5e-49 200.3 177 59.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 4.3e-49 198.7 209 59.3
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.6e-46 189.5 125 76.0
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 3.4e-46 189.1 175 60.6
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.7e-45 186.8 125 74.4
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.7e-45 186.8 194 56.2
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.2e-45 186.4 137 70.1
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.4e-44 183.7 137 73.7
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.9e-44 183.3 116 77.6
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.0e-42 176.0 115 72.2
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 5.6e-41 171.8 137 68.6
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.9e-37 158.7 123 71.5
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.2e-32 141.7 111 66.7
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.4e-31 140.6 113 65.5
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 6.4e-29 131.7 179 41.9
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.4e-29 131.7 97 71.1
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-28 130.6 97 70.1
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.2e-28 129.4 99 65.7
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.6e-27 127.1 97 69.1
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.0e-26 122.9 210 37.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 6.6e-26 121.7 122 54.1
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 5.6e-25 118.6 69 87.0
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.6e-24 117.1 149 50.3
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 3.6e-24 115.9 152 49.3
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 6.2e-24 115.2 109 59.6
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.2e-22 110.9 194 35.6
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 9.9e-22 107.8 84 64.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.0e-18 97.8 78 65.4
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.5e-17 94.0 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.1e-16 90.1 138 37.7
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.1e-16 90.1 103 42.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.8e-15 87.0 61 75.4
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 5.1e-10 68.9 83 53.0
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.6e-06 56.6 63 54.0
CSS0018444 Camellia sinensis var. sinensis HOM05D049081 ORTHO05D112653 4.5e-06 55.8 41 75.6
CSS0030303 Camellia sinensis var. sinensis HOM05D049081 ORTHO05D109731 9.9e-06 54.7 41 75.6


User provided reference genes

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