Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.3e-185 651.7 369 100.0
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.2e-133 479.6 367 74.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 6.5e-93 345.1 380 61.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.4e-89 332.8 394 58.6
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.5e-89 331.6 394 58.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.5e-84 317.4 383 57.2
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.5e-81 305.1 385 54.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.7e-80 302.8 414 55.1
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.0e-78 297.0 383 55.1
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.5e-78 295.8 385 53.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.9e-77 293.1 386 53.4
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.9e-77 293.1 455 50.8
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.5e-76 290.8 387 56.1
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.5e-76 290.8 379 55.9
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 4.7e-75 285.8 391 52.4
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.8e-74 283.9 379 54.1
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.0e-73 280.4 400 51.5
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 6.4e-72 275.4 386 54.1
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 8.3e-72 275.0 390 51.0
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.1e-71 274.6 393 49.4
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.4e-71 272.3 379 52.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.0e-69 266.5 377 51.7
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.0e-69 266.5 386 51.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.9e-69 266.2 396 51.3
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 6.6e-69 265.4 374 51.1
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 8.6e-69 265.0 377 50.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.1e-68 264.6 396 48.7
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 5.6e-68 262.3 394 50.5
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.6e-67 260.8 393 50.9
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.4e-66 257.7 374 49.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-66 257.3 376 52.4
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 3.1e-66 256.5 380 51.3
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 8.9e-66 255.0 388 49.5
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 2.6e-65 253.4 392 50.0
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 2.6e-65 253.4 387 51.7
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 3.4e-65 253.1 400 49.5
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.8e-65 252.3 383 49.1
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 9.8e-65 251.5 393 47.6
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 4.1e-63 246.1 393 49.1
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 9.2e-63 245.0 390 49.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.2e-62 244.6 403 47.1
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-62 244.6 383 47.8
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.6e-62 244.2 392 49.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 3.5e-62 243.0 382 45.5
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.5e-62 243.0 385 48.8
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.6e-62 242.7 399 48.6
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 6.0e-62 242.3 396 46.7
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.0e-61 241.5 389 48.3
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.0e-61 240.0 387 47.3
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.0e-61 240.0 381 47.2
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.9e-61 239.6 384 49.7
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 8.6e-61 238.4 390 46.9
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.1e-60 238.0 383 47.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.6e-60 235.7 384 46.6
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 3.6e-59 233.0 395 48.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.0e-57 227.3 350 48.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.6e-57 226.9 386 47.7
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.4e-57 226.5 303 52.5
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.7e-56 224.2 374 44.9
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.9e-56 223.4 352 47.7
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 4.9e-56 222.6 384 46.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.1e-55 221.5 385 47.0
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 1.1e-55 221.5 410 44.9
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.9e-55 220.7 381 48.8
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.4e-55 220.3 398 45.5
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.2e-55 219.9 382 47.4
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.1e-55 219.5 348 46.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-54 217.2 378 43.9
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.5e-54 216.5 396 49.0
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 4.6e-54 216.1 378 47.9
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.0e-54 215.7 381 43.3
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.0e-53 214.9 258 56.2
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.3e-53 214.5 387 48.8
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-53 214.2 382 47.1
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.7e-53 214.2 375 48.0
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.5e-52 211.1 371 47.7
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-52 210.7 381 43.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.5e-52 210.3 375 44.8
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 2.5e-52 210.3 382 48.2
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 3.3e-52 209.9 352 45.5
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.3e-52 208.8 377 44.8
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.4e-50 203.8 369 45.3
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.1e-50 203.4 374 45.2
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 5.2e-50 202.6 387 44.4
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 5.2e-50 202.6 346 50.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.6e-49 200.3 353 46.7
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.4e-49 199.9 368 45.7
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.4e-49 199.9 383 46.5
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 7.6e-49 198.7 371 42.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.9e-49 198.4 381 49.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.2e-48 197.2 392 45.7
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.4e-48 195.3 370 44.6
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.4e-47 194.5 385 45.5
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-47 193.4 336 45.8
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.6e-46 191.0 386 40.9
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.1e-46 190.7 370 44.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.0e-46 189.1 378 41.3
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.8e-46 188.7 371 45.6
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.0e-45 188.3 377 43.0
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-45 187.6 336 45.2
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.7e-45 187.6 379 42.2
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 3.0e-45 186.8 369 43.9
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 5.1e-45 186.0 375 42.1
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 5.1e-45 186.0 400 42.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 1.9e-44 184.1 378 39.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 4.3e-44 183.0 381 40.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 5.6e-44 182.6 377 43.2
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 7.3e-44 182.2 333 43.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.3e-43 181.4 347 44.4
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.6e-43 181.0 376 43.1
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.1e-43 180.6 375 41.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.8e-43 179.5 378 41.3
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.4e-42 177.9 375 40.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 3.1e-42 176.8 380 41.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.5e-41 174.5 385 40.8
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.0e-41 174.1 188 62.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.0e-41 174.1 376 39.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.6e-41 173.7 379 42.5
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.8e-41 172.6 378 41.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.8e-40 169.9 374 37.7
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.4e-40 169.1 384 41.4
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.5e-38 163.3 380 37.9
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.6e-38 162.9 344 43.0
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.3e-37 160.6 345 39.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 9.6e-36 155.2 371 37.2
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.3e-35 154.8 344 39.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.1e-35 154.1 375 38.1
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.6e-35 153.3 363 40.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.1e-34 151.8 379 36.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.8e-34 151.0 377 39.0
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.4e-34 150.6 344 38.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.9e-34 149.1 224 50.9
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 7.6e-33 145.6 328 39.0
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.9e-32 143.7 348 38.5
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-31 141.4 383 33.9
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-30 138.3 392 36.0
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.6e-30 137.9 390 34.9
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.1e-30 137.5 356 35.7
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 7.9e-30 135.6 381 35.2
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.9e-29 133.3 215 49.8
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.9e-29 133.3 313 37.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.1e-29 132.9 378 36.0
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 6.7e-29 132.5 351 39.6
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.9e-28 131.0 360 36.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 3.3e-28 130.2 357 38.1
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 9.6e-28 128.6 313 36.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.3e-27 128.3 369 35.8
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.3e-27 128.3 352 36.1
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-27 127.5 246 41.1
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 8.1e-27 125.6 278 39.9
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.0e-26 123.2 210 46.2
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 6.9e-26 122.5 216 43.1
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 9.0e-26 122.1 379 35.6
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.2e-25 121.7 338 37.6
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.2e-25 121.7 338 37.6
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.6e-25 119.0 210 45.2
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.8e-24 116.7 210 43.3
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.2e-23 113.2 211 43.1
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.2e-23 113.2 211 43.1
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.2e-22 111.7 212 44.3
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.2e-22 111.7 212 44.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 2.1e-22 110.9 219 43.4
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.0e-21 108.6 267 39.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.0e-21 108.6 301 36.5
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.5e-20 104.8 133 58.6
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.9e-20 104.4 133 54.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.8e-19 100.5 214 44.9
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 9.0e-18 95.5 375 31.2
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.4e-17 93.6 359 31.8
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.3e-16 91.7 365 34.2
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.2e-09 68.6 155 37.4
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.6e-09 67.4 124 43.5
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 3.8e-08 63.5 69 50.7
vmacro18415 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.5e-07 60.8 94 40.4
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.5e-07 59.7 59 57.6
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-06 58.5 59 55.9


User provided reference genes

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