Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0019900 Rhododendron simsii HOM05D015679 ORTHO05D017801 1.1e-133 479.9 243 100.0
vmacro18521 Vaccinium macrocarpon HOM05D000294 ORTHO05D000177 2.2e-36 156.8 116 67.2
vmacro18520 Vaccinium macrocarpon HOM05D000294 ORTHO05D000177 6.8e-30 135.2 133 54.9
EL10Ac2g04245 Beta vulgaris HOM05D000294 ORTHO05D000177 3.6e-23 112.8 115 48.7
AUR62012367 Chenopodium quinoa HOM05D000294 ORTHO05D000177 4.0e-22 109.4 115 46.1
AUR62031495 Chenopodium quinoa HOM05D000294 ORTHO05D000177 4.0e-22 109.4 115 46.1
Phvul.008G238300 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 1.5e-21 107.5 114 47.4
Prupe.3G164700 Prunus persica HOM05D000294 ORTHO05D000177 1.5e-21 107.5 115 47.0
Gohir.A08G039200 Gossypium hirsutum HOM05D000294 ORTHO05D000177 2.6e-21 106.7 114 46.5
Gorai.004G048900 Gossypium raimondii HOM05D000294 ORTHO05D000177 4.4e-21 105.9 114 45.6
Duzib138G1364 Durio zibethinus HOM05D000294 ORTHO05D000177 9.8e-21 104.8 147 37.4
Solyc07g049120.2 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.7e-20 104.0 137 40.9
Sopen07g024560 Solanum pennellii HOM05D000294 ORTHO05D000177 1.7e-20 104.0 137 40.9
Thecc.04G065400 Theobroma cacao HOM05D000294 ORTHO05D000177 1.7e-20 104.0 142 39.4
Cc05_g03420 Coffea canephora HOM05D000294 ORTHO05D000177 2.2e-20 103.6 116 45.7
VMungo0647G2185 Vigna mungo HOM05D000294 ORTHO05D000177 2.2e-20 103.6 114 46.5
Gohir.D08G049400 Gossypium hirsutum HOM05D000294 ORTHO05D000177 4.9e-20 102.4 114 44.7
CAN.G834.8 Capsicum annuum HOM05D000294 ORTHO05D000177 6.3e-20 102.1 114 45.6
LjContig00141g0020132 Lotus japonicus HOM05D000294 ORTHO05D000177 6.3e-20 102.1 115 45.2
Solyc07g049130.1 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.1e-19 101.3 137 40.1
arahy.Tifrunner.gnm1.ann1.QDSR5S Arachis hypogaea HOM05D000294 ORTHO05D000177 1.8e-19 100.5 112 45.5
arahy.Tifrunner.gnm1.ann1.YU3LHJ Arachis hypogaea HOM05D000294 ORTHO05D000177 1.8e-19 100.5 112 45.5
Manes.01G121150 Manihot esculenta HOM05D000294 ORTHO05D000177 7.0e-19 98.6 113 45.1
PGSC0003DMG400038899 Solanum tuberosum HOM05D000294 ORTHO05D000177 2.7e-18 96.7 137 40.1
DCAR_001088 Daucus carota HOM05D000294 ORTHO05D000177 3.5e-18 96.3 133 37.6
Lalb_Chr10g0104231 Lupinus albus HOM05D000294 ORTHO05D000177 4.5e-18 95.9 128 39.1
Sopen02g011590 Solanum pennellii HOM05D000294 ORTHO05D000177 7.8e-18 95.1 129 39.5
Solyc02g036170.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.0e-17 94.7 117 43.6
Lj6g0009382 Lotus japonicus HOM05D000294 ORTHO05D000177 2.3e-17 93.6 123 38.2
CAN.G834.4 Capsicum annuum HOM05D000294 ORTHO05D000177 2.9e-17 93.2 114 43.0
Sopen02g011530 Solanum pennellii HOM05D000294 ORTHO05D000177 3.9e-17 92.8 129 39.5
Lalb_Chr17g0345981 Lupinus albus HOM05D000294 ORTHO05D000177 6.6e-17 92.0 113 41.6
Solyc02g036140.1 Solanum lycopersicum HOM05D000294 ORTHO05D000177 8.6e-17 91.7 115 42.6
Oeu016323.1 Olea europaea HOM05D000294 ORTHO05D000177 2.5e-16 90.1 116 38.8
Solyc02g033120.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 2.5e-16 90.1 113 44.2
MD17G1254800 Malus domestica HOM05D000294 ORTHO05D000177 3.3e-16 89.7 118 38.1
Sopen02g010840 Solanum pennellii HOM05D000294 ORTHO05D000177 4.3e-16 89.4 137 37.2
SGA_v2.0_scaffold313G48344 Striga asiatica HOM05D000294 ORTHO05D000177 4.3e-16 89.4 115 39.1
Solyc02g033100.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 5.6e-16 89.0 137 38.0
Migut.I00193 Erythranthe guttata HOM05D000294 ORTHO05D000177 7.3e-16 88.6 149 36.2
Solyc02g033110.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 9.5e-16 88.2 116 41.4
Solyc02g032555.1 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.2e-15 87.8 129 38.0
Solyc02g036230.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.6e-15 87.4 129 38.8
Solyc02g036200.1 Solanum lycopersicum HOM05D000294 ORTHO05D000177 2.1e-15 87.0 114 42.1
arahy.Tifrunner.gnm1.ann1.NBZU38 Arachis hypogaea HOM05D000294 ORTHO05D000177 1.8e-14 84.0 143 35.7
Rhsim10G0181000 Rhododendron simsii HOM05D039283 ORTHO05D000177 3.1e-14 83.2 52 69.2
Medtr8g097310 Medicago truncatula HOM05D000294 ORTHO05D000177 5.2e-14 82.4 132 31.1
arahy.Tifrunner.gnm1.ann1.RCY4IA Arachis hypogaea HOM05D000294 ORTHO05D000177 6.8e-14 82.0 112 40.2
Lalb_Chr10g0104221 Lupinus albus HOM05D000294 ORTHO05D000177 6.8e-14 82.0 114 36.8
SalBow5G0576 Salvia bowleyana HOM05D000294 ORTHO05D000177 5.8e-13 79.0 107 40.2
Psat7g035600 Pisum sativum HOM05D000612 ORTHO05D000461 2.9e-12 76.6 187 29.4
FvH4_1g29980 Fragaria vesca HOM05D000294 ORTHO05D000177 1.9e-11 73.9 113 35.4
Glyma.02G243100 Glycine max HOM05D000294 ORTHO05D000177 1.9e-11 73.9 49 61.2
RcHm_v2.0_Chr3g0492341 Rosa chinensis HOM05D000294 ORTHO05D000177 1.9e-11 73.9 113 35.4
vmacro20636 Vaccinium macrocarpon HOM05D039283 ORTHO05D000177 4.1e-11 72.8 55 58.2
Hund15832 Selenicereus undatus HOM05D000294 ORTHO05D000177 2.7e-10 70.1 56 51.8
FvH4_1g26670 Fragaria vesca HOM05D000294 ORTHO05D000177 3.5e-10 69.7 112 35.7
FAN19G0315 Fragaria x ananassa HOM05D000294 ORTHO05D000177 3.5e-10 69.7 112 35.7
SGA_v2.0_scaffold56G20005 Striga asiatica HOM05D000294 ORTHO05D000177 3.5e-10 69.7 116 33.6
Aqoxy1G01413 Aquilegia oxysepala HOM05D000294 ORTHO05D000177 4.6e-10 69.3 140 32.1
FAN26G2885 Fragaria x ananassa HOM05D000294 ORTHO05D000177 6.0e-10 68.9 112 35.7
Lalb_Chr17g0345991 Lupinus albus HOM05D000294 ORTHO05D000177 6.0e-10 68.9 114 32.5
TPR.G12853 Trifolium pratense HOM05D000294 ORTHO05D000177 6.0e-10 68.9 132 31.8
TAR374G0452 Trochodendron aralioides HOM05D000294 ORTHO05D000177 7.8e-10 68.6 137 32.1
Duzib251G0839 Durio zibethinus HOM05D000294 ORTHO05D000177 1.0e-09 68.2 118 32.2
Gohir.A03G112100 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.7e-09 67.4 122 32.0
Gohir.D02G136700 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.7e-09 67.4 122 32.0
Gorai.005G152700 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.7e-09 67.4 122 32.0
Solyc02g036130.3 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.7e-09 67.4 82 42.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 2.3e-09 67.0 123 31.7
TAR636G3667 Trochodendron aralioides HOM05D000294 ORTHO05D000177 3.9e-09 66.2 152 28.3
FAN23G3121 Fragaria x ananassa HOM05D000294 ORTHO05D000177 5.0e-09 65.9 112 33.9
Duzib248G1639 Durio zibethinus HOM05D000294 ORTHO05D000177 6.6e-09 65.5 122 30.3
Nn4g24470 Nelumbo nucifera HOM05D000294 ORTHO05D000177 8.6e-09 65.1 125 33.6
Rhsim10G0181100 Rhododendron simsii HOM05D000294 ORTHO05D000177 8.6e-09 65.1 37 75.7
Gohir.A13G027800 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.9e-08 63.9 117 32.5
Gohir.D13G026600 Gossypium hirsutum HOM05D000294 ORTHO05D000177 1.9e-08 63.9 117 32.5
Gorai.013G029900 Gossypium raimondii HOM05D000294 ORTHO05D000177 1.9e-08 63.9 117 32.5
TPR.G15086 Trifolium pratense HOM05D000294 ORTHO05D000177 3.3e-08 63.2 112 33.0
MD13G1017800 Malus domestica HOM05D000294 ORTHO05D000177 4.3e-08 62.8 119 32.8
TWI77G0264 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 4.3e-08 62.8 64 42.2
Glyma.08G086900 Glycine max HOM05D000294 ORTHO05D000177 9.5e-08 61.6 112 33.9
PGR142G0411 Punica granatum HOM05D000294 ORTHO05D000177 1.2e-07 61.2 117 30.8
GSVIVG01012050001 Vitis vinifera HOM05D000294 ORTHO05D000177 1.6e-07 60.8 90 34.4
Duzib268G0713 Durio zibethinus HOM05D000294 ORTHO05D000177 2.1e-07 60.5 122 29.5
Nn3g18431 Nelumbo nucifera HOM05D000294 ORTHO05D000177 2.1e-07 60.5 177 28.8
Thecc.02G307100 Theobroma cacao HOM05D000294 ORTHO05D000177 2.1e-07 60.5 203 26.6
CiPaw.06G055100 Carya illinoinensis HOM05D000294 ORTHO05D000177 2.8e-07 60.1 120 30.0
Psat2g046120 Pisum sativum HOM05D000294 ORTHO05D000177 3.6e-07 59.7 114 34.2
GSVIVG01011622001 Vitis vinifera HOM05D000294 ORTHO05D000177 3.6e-07 59.7 139 28.1
SMO304G0060 Selaginella moellendorffii HOM05D000294 ORTHO05D000177 4.7e-07 59.3 137 27.7
Lj6g0001831 Lotus japonicus HOM05D000294 ORTHO05D000177 8.0e-07 58.5 113 31.9
Phvul.009G241300 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 8.0e-07 58.5 115 30.4
Nitab4.5_0003884g0050 Nicotiana tabacum HOM05D000294 ORTHO05D000177 1.1e-06 58.2 122 31.1
Peaxi162Scf00921g00004 Petunia axillaris HOM05D000294 ORTHO05D000177 1.1e-06 58.2 33 72.7
Potri.008G137300 Populus trichocarpa HOM05D000294 ORTHO05D000177 1.1e-06 58.2 137 29.9
TAR622G0393 Trochodendron aralioides HOM05D000294 ORTHO05D000177 1.1e-06 58.2 113 31.0
arahy.Tifrunner.gnm1.ann1.CX7L4G Arachis hypogaea HOM05D000294 ORTHO05D000177 1.4e-06 57.8 112 33.0
CDE02G1926 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 1.4e-06 57.8 115 31.3
Glyma.09G052400 Glycine max HOM05D000294 ORTHO05D000177 1.4e-06 57.8 115 30.4
Glyma.15G158600 Glycine max HOM05D000294 ORTHO05D000177 1.4e-06 57.8 115 30.4
Manes.15G136800 Manihot esculenta HOM05D000294 ORTHO05D000177 1.4e-06 57.8 130 28.5
TWI15G0108 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 1.4e-06 57.8 113 32.7
FvH4_4g33250 Fragaria vesca HOM05D000294 ORTHO05D000177 1.8e-06 57.4 156 27.6
FAN07G0499 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.8e-06 57.4 156 27.6
FAN12G2312 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.8e-06 57.4 156 27.6
FAN17G2951 Fragaria x ananassa HOM05D000742 ORTHO05D000924 1.8e-06 57.4 156 27.6
Glyma.05G132300 Glycine max HOM05D000294 ORTHO05D000177 1.8e-06 57.4 113 31.9
Lalb_Chr18g0052201 Lupinus albus HOM05D000294 ORTHO05D000177 1.8e-06 57.4 113 32.7
MD16G1015800 Malus domestica HOM05D000294 ORTHO05D000177 1.8e-06 57.4 140 29.3
PGSC0003DMG400047026 Solanum tuberosum HOM05D000294 ORTHO05D000177 1.8e-06 57.4 33 72.7
HPP92_005954 Vanilla planifolia HOM05D000294 ORTHO05D000177 1.8e-06 57.4 113 30.1
TPR.G9986 Trifolium pratense HOM05D000294 ORTHO05D000177 2.3e-06 57.0 119 30.3
TAR625G0684 Trochodendron aralioides HOM05D000294 ORTHO05D000177 2.3e-06 57.0 112 27.7
CANSAT78G0212 Cannabis sativa HOM05D000294 ORTHO05D000177 3.1e-06 56.6 120 29.2
Cfa015050 Carpinus fangiana HOM05D000294 ORTHO05D000177 3.1e-06 56.6 118 30.5
CDE06G2754 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 3.1e-06 56.6 115 30.4
Eucgr.G02080 Eucalyptus grandis HOM05D000294 ORTHO05D000177 3.1e-06 56.6 118 28.8
Os06g0666100 Oryza sativa ssp. japonica HOM05D000294 ORTHO05D000177 3.1e-06 56.6 113 31.0
SMO119G0112 Selaginella moellendorffii HOM05D000294 ORTHO05D000177 3.1e-06 56.6 142 26.8
Cfa007782 Carpinus fangiana HOM05D015679 ORTHO05D017801 4.0e-06 56.2 78 48.7
CDE11G0571 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 4.0e-06 56.2 115 29.6
FAN22G1641 Fragaria x ananassa HOM05D000742 ORTHO05D000924 4.0e-06 56.2 156 26.9
PSO478G1865 Papaver somniferum HOM05D000294 ORTHO05D000177 4.0e-06 56.2 134 29.9
Phvul.002G190500 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 4.0e-06 56.2 112 32.1
Rhsim09G0087400 Rhododendron simsii HOM05D000294 ORTHO05D000177 4.0e-06 56.2 122 30.3
SGA_v2.0_scaffold143G35730 Striga asiatica HOM05D000294 ORTHO05D000177 4.0e-06 56.2 137 29.9
TAR374G0402 Trochodendron aralioides HOM05D000294 ORTHO05D000177 4.0e-06 56.2 112 31.2
GSVIVG01012125001 Vitis vinifera HOM05D000294 ORTHO05D000177 4.0e-06 56.2 113 32.7
Lsat_1_v5_gn_4_23140 Lactuca sativa HOM05D000294 ORTHO05D000177 5.2e-06 55.8 133 28.6
PSO017G0580 Papaver somniferum HOM05D000294 ORTHO05D000177 5.2e-06 55.8 128 30.5
Psat1g149560 Pisum sativum HOM05D000294 ORTHO05D000177 5.2e-06 55.8 115 30.4
Sabra08G0104700 Salix brachista HOM05D000294 ORTHO05D000177 5.2e-06 55.8 141 28.4
AagrBONN_evm.TU.Sc2ySwM_228.2823 Anthoceros agrestis HOM05D000294 ORTHO05D000177 6.8e-06 55.5 188 25.0
AagrBONN_evm.TU.Sc2ySwM_228.2826 Anthoceros agrestis HOM05D000294 ORTHO05D000177 6.8e-06 55.5 188 25.5
Manes.17G085975 Manihot esculenta HOM05D000294 ORTHO05D000177 6.8e-06 55.5 119 29.4
Solyc04g008090.4 Solanum lycopersicum HOM05D000294 ORTHO05D000177 6.8e-06 55.5 117 32.5
Sopen04g003230 Solanum pennellii HOM05D000294 ORTHO05D000177 6.8e-06 55.5 117 32.5
VMungo0251G0002 Vigna mungo HOM05D000294 ORTHO05D000177 6.8e-06 55.5 112 31.2
Ciclev10016611m.g Citrus clementina HOM05D000294 ORTHO05D000177 8.9e-06 55.1 137 25.5
MBI19_g39074_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 8.9e-06 55.1 148 27.0
Nitab4.5_0012105g0020 Nicotiana tabacum HOM05D000294 ORTHO05D000177 8.9e-06 55.1 117 30.8
Prupe.1G335800 Prunus persica HOM05D000294 ORTHO05D000177 8.9e-06 55.1 140 28.6
Sopen02g017650 Solanum pennellii HOM05D000294 ORTHO05D000177 8.9e-06 55.1 112 31.2
PGSC0003DMG400029466 Solanum tuberosum HOM05D000294 ORTHO05D000177 8.9e-06 55.1 117 30.8


User provided reference genes

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