Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 5.4e-84 314.3 162 100.0
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.4e-63 246.5 161 81.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-58 230.3 154 77.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.8e-58 229.6 154 77.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.5e-57 226.5 149 81.9
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.3e-56 221.1 158 73.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.8e-55 219.5 154 77.3
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.0e-55 217.2 154 75.3
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 7.6e-54 214.2 139 78.4
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.9e-53 212.2 137 78.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.4e-52 209.9 156 73.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.4e-52 209.9 156 73.7
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.2e-52 208.8 135 79.3
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.2e-52 208.8 135 79.3
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.2e-52 208.8 157 71.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 4.2e-52 208.4 135 78.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 4.2e-52 208.4 160 70.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.5e-52 208.0 154 72.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.3e-52 207.2 154 74.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.3e-52 207.2 157 70.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.2e-51 206.8 154 71.4
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 3.5e-51 205.3 140 75.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.5e-51 205.3 153 73.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 4.6e-51 204.9 137 75.9
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.6e-51 204.9 154 74.0
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.6e-51 204.9 153 71.2
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.9e-51 204.1 157 70.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 7.9e-51 204.1 136 77.2
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.3e-50 203.4 168 66.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.3e-50 203.4 168 66.7
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.3e-50 203.4 160 69.4
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-50 203.4 154 73.4
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.8e-50 203.0 161 71.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.3e-50 202.6 157 70.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.0e-50 202.2 157 70.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.0e-50 202.2 136 73.5
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 3.0e-50 202.2 152 69.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 3.9e-50 201.8 137 77.4
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 3.9e-50 201.8 137 77.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.1e-50 201.4 137 74.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.1e-50 201.4 156 69.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 6.7e-50 201.1 136 75.7
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 6.7e-50 201.1 152 69.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 6.7e-50 201.1 146 71.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 8.7e-50 200.7 142 74.6
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 8.7e-50 200.7 142 74.6
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 8.7e-50 200.7 148 72.3
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.5e-49 199.9 137 74.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.9e-49 199.5 138 75.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.9e-49 199.5 143 72.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.5e-49 199.1 135 74.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.3e-49 198.7 165 67.3
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 3.3e-49 198.7 157 68.8
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 4.3e-49 198.4 151 70.9
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.3e-49 198.4 153 68.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 4.3e-49 198.4 137 73.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.7e-49 198.0 137 73.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 7.4e-49 197.6 156 68.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.3e-48 196.8 135 71.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.6e-48 196.4 162 68.5
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.8e-48 195.7 137 71.5
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.8e-48 195.7 159 67.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 6.3e-48 194.5 150 70.0
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.3e-48 194.5 159 66.0
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.4e-47 193.4 137 71.5
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.8e-47 193.0 137 74.5
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-47 193.0 137 71.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-47 193.0 137 71.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.4e-47 192.6 157 64.3
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.1e-47 191.8 152 67.1
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.1e-47 191.8 152 67.1
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 6.9e-47 191.0 136 72.8
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 6.9e-47 191.0 137 70.8
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.9e-47 191.0 152 67.1
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 6.9e-47 191.0 137 73.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 9.0e-47 190.7 157 66.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.2e-46 190.3 137 71.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.0e-46 189.5 152 69.7
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 4.5e-46 188.3 113 87.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 5.9e-46 188.0 147 68.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 7.7e-46 187.6 133 72.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.3e-45 186.8 156 64.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.7e-45 186.4 153 65.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.7e-45 186.4 153 65.4
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.2e-45 186.0 153 66.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.2e-45 186.0 153 65.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.2e-45 186.0 153 66.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.2e-45 186.0 153 66.0
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.2e-45 186.0 148 66.9
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.9e-45 185.7 153 66.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.9e-45 185.7 157 63.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.0e-45 184.9 153 65.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 6.5e-45 184.5 153 65.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 6.5e-45 184.5 153 65.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.1e-44 183.7 133 73.7
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.9e-44 183.0 153 65.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.2e-44 181.8 154 64.3
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-44 181.4 106 85.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.5e-44 181.4 153 64.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.1e-43 179.5 153 63.4
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.7e-43 179.1 136 65.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 3.6e-43 178.7 151 66.2
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 6.1e-43 177.9 156 60.9
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 6.1e-43 177.9 149 63.8
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 6.1e-43 177.9 149 63.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 6.1e-43 177.9 157 61.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 7.9e-43 177.6 136 67.6
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.0e-42 177.2 149 62.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.5e-41 172.6 117 71.8
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 7.4e-41 171.0 153 59.5
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.7e-40 169.9 132 66.7
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 4.8e-40 168.3 136 64.7
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.8e-39 166.4 108 79.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.9e-38 161.4 137 63.5
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.6e-35 153.3 138 57.2
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 3.9e-34 148.7 115 67.0
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.9e-34 148.7 91 80.2
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 2.8e-32 142.5 139 50.4
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 3.7e-32 142.1 106 67.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.1e-31 140.6 139 49.6
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.0e-30 136.3 101 71.3
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-29 132.9 137 56.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 8.5e-29 131.0 96 69.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 7.2e-28 127.9 101 65.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.2e-27 127.1 103 62.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.6e-27 126.7 101 64.4
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.7e-27 125.9 116 56.0
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.7e-27 125.2 107 59.8
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.0e-27 124.4 113 56.6
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.0e-26 122.5 101 61.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 4.0e-26 122.1 107 57.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 5.7e-25 118.2 103 62.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 9.7e-25 117.5 102 61.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 9.1e-23 110.9 94 58.5
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.0e-21 105.1 111 53.2
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.2e-20 102.4 93 57.0
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-20 101.7 96 64.6
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.5e-20 101.7 103 51.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.5e-20 101.7 93 55.9
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 5.5e-20 101.7 93 59.1
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.6e-19 100.1 98 56.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.7e-19 99.4 108 50.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 8.0e-19 97.8 88 56.8
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-17 93.6 71 63.4
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.4e-17 92.0 63 76.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 9.8e-17 90.9 98 45.9
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.3e-16 90.5 105 44.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.8e-16 89.4 94 50.0
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.7e-16 89.0 67 70.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.1e-15 87.4 128 45.3
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.1e-15 87.4 81 59.3
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.8e-10 70.1 87 37.9


User provided reference genes

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