Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0007900 Rhododendron simsii HOM05D000570 ORTHO05D005344 2.4e-89 332.4 199 100.0
Rhsim03G0009000 Rhododendron simsii HOM05D000570 ORTHO05D005344 1.5e-22 110.5 219 41.1
vmacro07934 Vaccinium macrocarpon HOM05D000570 ORTHO05D005344 7.8e-16 88.2 219 35.2
MELO3C009641.2 Cucumis melo HOM05D000570 ORTHO05D005344 5.2e-12 75.5 161 33.5
CAN.G654.5 Capsicum annuum HOM05D000570 ORTHO05D005344 6.8e-12 75.1 206 29.6
Hma1.2p1_0005F.1_g004280 Hydrangea macrophylla HOM05D000570 ORTHO05D005344 1.5e-11 73.9 239 27.6
DCAR_025610 Daucus carota HOM05D000570 ORTHO05D005344 5.8e-11 72.0 119 45.4
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.3e-10 70.9 50 70.0
Dinv24091 Davidia involucrata HOM05D000570 ORTHO05D005344 1.7e-10 70.5 59 64.4
Glyma.03G143000 Glycine max HOM05D000570 ORTHO05D005344 3.7e-10 69.3 128 46.1
Cc00_g14620 Coffea canephora HOM05D000570 ORTHO05D005344 6.4e-10 68.6 48 70.8
ClCG10G017390 Citrullus lanatus HOM05D000570 ORTHO05D005344 1.1e-09 67.8 49 65.3
PSO384G3482 Papaver somniferum HOM05D000570 ORTHO05D005344 1.1e-09 67.8 116 41.4
TAR636G1287 Trochodendron aralioides HOM05D000570 ORTHO05D005344 1.1e-09 67.8 50 68.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.4e-09 67.4 125 44.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.9e-09 67.0 125 43.2
CsaV3_3G038980 Cucumis sativus L. HOM05D000570 ORTHO05D005344 2.4e-09 66.6 49 63.3
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 4.1e-09 65.9 116 44.8
PSO384G0092 Papaver somniferum HOM05D000570 ORTHO05D001174 5.4e-09 65.5 116 40.5
Peaxi162Scf00258g00013 Petunia axillaris HOM05D000570 ORTHO05D005344 7.0e-09 65.1 50 62.0
CDE05G3186 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.6e-08 63.9 83 43.4
SalBow6G0661 Salvia bowleyana HOM05D000570 ORTHO05D005344 2.0e-08 63.5 110 34.5
Nn7g36042 Nelumbo nucifera HOM05D000570 ORTHO05D005344 2.7e-08 63.2 50 62.0
Manes.09G032500 Manihot esculenta HOM05D000570 ORTHO05D005344 3.5e-08 62.8 61 60.7
Medtr7g092910 Medicago truncatula HOM05D000570 ORTHO05D005344 4.6e-08 62.4 181 34.3
TPR.G13237 Trifolium pratense HOM05D000570 ORTHO05D005344 4.6e-08 62.4 137 35.0
Migut.J01820 Erythranthe guttata HOM05D000570 ORTHO05D005344 6.0e-08 62.0 47 61.7
HanXRQChr05g0132831 Helianthus annuus HOM05D000570 ORTHO05D005344 6.0e-08 62.0 142 31.7
SalBow1G4100 Salvia bowleyana HOM05D001697 ORTHO05D001905 6.0e-08 62.0 101 39.6
SalBow4G0572 Salvia bowleyana HOM05D001697 ORTHO05D001905 6.0e-08 62.0 101 39.6
SalBow8G2618 Salvia bowleyana HOM05D001697 ORTHO05D005344 6.0e-08 62.0 101 39.6
MSTRG.6467 Avicennia marina HOM05D000570 ORTHO05D005344 1.0e-07 61.2 49 65.3
SalBow2G0713 Salvia bowleyana HOM05D001697 ORTHO05D001905 1.3e-07 60.8 52 55.8
SalBow8G2090 Salvia bowleyana HOM05D001697 ORTHO05D001905 1.3e-07 60.8 52 55.8
GSVIVG01033522001 Vitis vinifera HOM05D000570 ORTHO05D005344 1.3e-07 60.8 50 64.0
Prupe.6G256200 Prunus persica HOM05D000570 ORTHO05D005344 1.7e-07 60.5 82 45.1
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.3e-07 60.1 92 45.7
Glyma.02G177000 Glycine max HOM05D000570 ORTHO05D005344 2.3e-07 60.1 50 62.0
Phvul.007G258000 Phaseolus vulgaris HOM05D000570 ORTHO05D005344 3.0e-07 59.7 50 60.0
Lj2C371T5 Lonicera japonica HOM05D000570 ORTHO05D005344 3.9e-07 59.3 47 61.7
Psat0s5999g0080 Pisum sativum HOM05D039369 ORTHO05D005344 3.9e-07 59.3 82 42.7
DCAR_019838 Daucus carota HOM05D000570 ORTHO05D005344 5.0e-07 58.9 46 63.0
DCAR_026247 Daucus carota HOM05D000570 ORTHO05D005344 5.0e-07 58.9 46 63.0
Lj5g0016632 Lotus japonicus HOM05D000570 ORTHO05D005344 5.0e-07 58.9 50 62.0
Lalb_Chr18g0047751 Lupinus albus HOM05D000570 ORTHO05D005344 5.0e-07 58.9 116 44.0
ATR0605G228 Amborella trichopoda HOM05D000570 ORTHO05D001174 6.6e-07 58.5 51 56.9
MBI18_g18577_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D005344 6.6e-07 58.5 51 58.8
SGA_v2.0_scaffold105G30477 Striga asiatica HOM05D006381 ORTHO05D005344 6.6e-07 58.5 53 58.5
arahy.Tifrunner.gnm1.ann1.7J08Q6 Arachis hypogaea HOM05D000570 ORTHO05D005344 8.6e-07 58.2 82 43.9
Prupe.7G074000 Prunus persica HOM05D000570 ORTHO05D005344 8.6e-07 58.2 50 60.0
SalBow6G3981 Salvia bowleyana HOM05D001697 ORTHO05D001905 8.6e-07 58.2 98 38.8
Oeu013830.1 Olea europaea HOM05D000570 ORTHO05D001174 1.1e-06 57.8 85 49.4
VMungo0720G0914 Vigna mungo HOM05D000570 ORTHO05D005344 1.1e-06 57.8 50 58.0
EL10Ac3g06942 Beta vulgaris HOM05D000570 ORTHO05D005344 1.9e-06 57.0 49 61.2
BcaB01g06020 Brassica carinata HOM05D000570 ORTHO05D005344 1.9e-06 57.0 142 31.7
Eucgr.A02440 Eucalyptus grandis HOM05D000570 ORTHO05D005344 2.5e-06 56.6 50 58.0
TPR.G24915 Trifolium pratense HOM05D000570 ORTHO05D005344 2.5e-06 56.6 50 56.0
Medtr1g053525 Medicago truncatula HOM05D000570 ORTHO05D005344 3.3e-06 56.2 53 52.8
Nitab4.5_0003572g0030 Nicotiana tabacum HOM05D000570 ORTHO05D005344 3.3e-06 56.2 50 54.0
PSO724G1397 Papaver somniferum HOM05D000570 ORTHO05D001174 3.3e-06 56.2 49 53.1
PSO135G0001 Papaver somniferum HOM05D000570 ORTHO05D001174 4.3e-06 55.8 49 53.1
PSO384G1001 Papaver somniferum HOM05D000570 ORTHO05D005344 4.3e-06 55.8 48 56.2
Cfa016901 Carpinus fangiana HOM05D000570 ORTHO05D005344 5.6e-06 55.5 49 61.2
Sed0020739 Sechium edule HOM05D000570 ORTHO05D005344 5.6e-06 55.5 52 57.7
Aqoxy1G00120 Aquilegia oxysepala HOM05D000570 ORTHO05D005344 7.3e-06 55.1 76 46.1
Aqoxy1G00160 Aquilegia oxysepala HOM05D000570 ORTHO05D005344 7.3e-06 55.1 76 46.1
PGR004G1151 Punica granatum HOM05D000570 ORTHO05D005344 7.3e-06 55.1 50 58.0
Sc13g0002150 Simmondsia chinensis HOM05D000570 ORTHO05D005344 7.3e-06 55.1 49 61.2
Lju124C29T10 Lonicera japonica HOM05D000570 ORTHO05D005344 9.5e-06 54.7 52 51.9


User provided reference genes

Program Settings