Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.5e-118 428.3 282 100.0
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.4e-111 406.0 282 80.9
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 3.2e-108 395.6 282 78.4
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.2e-107 393.7 282 77.0
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.8e-104 381.7 282 75.2
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.4e-103 379.4 283 74.6
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.1e-103 379.0 282 73.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.5e-102 376.7 282 73.8
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 3.5e-102 375.6 283 74.6
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.3e-101 373.6 283 74.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.2e-101 372.9 283 74.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 3.8e-101 372.1 283 73.9
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.9e-100 369.8 218 88.5
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.5e-100 369.4 282 72.0
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.2e-100 369.0 282 72.7
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 3.2e-100 369.0 282 72.3
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.2e-100 368.6 282 73.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 9.4e-100 367.5 284 72.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.6e-99 365.5 282 72.0
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 6.1e-99 364.8 282 72.0
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 8.0e-99 364.4 282 70.9
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 8.0e-99 364.4 282 71.6
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.0e-98 364.0 282 70.6
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 5.2e-98 361.7 282 70.9
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 2.6e-97 359.4 281 71.5
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.3e-97 359.0 282 70.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.7e-97 358.2 282 70.2
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.7e-97 358.2 285 71.6
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 9.7e-97 357.5 282 70.6
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.2e-96 356.3 282 69.5
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.1e-95 354.0 283 70.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.4e-95 353.6 282 69.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.8e-95 353.2 283 70.0
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 9.1e-95 350.9 282 68.1
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.6e-94 350.1 282 69.5
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 2.6e-94 349.4 283 69.6
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 5.9e-94 348.2 283 69.3
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.3e-93 347.1 282 67.0
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.7e-93 346.7 282 68.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.8e-93 345.5 282 68.8
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.2e-92 342.4 283 67.5
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.2e-92 342.0 282 68.4
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.5e-92 341.7 282 66.0
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 7.2e-92 341.3 278 68.7
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.7e-91 339.3 283 67.5
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 6.1e-91 338.2 280 69.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.1e-91 338.2 282 68.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.0e-90 337.4 282 67.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.4e-90 337.0 283 67.8
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.4e-90 337.0 283 66.8
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.3e-90 336.3 282 66.3
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.3e-90 336.3 284 67.3
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-90 336.3 220 81.8
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 3.0e-90 335.9 282 66.7
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 4.0e-90 335.5 219 80.4
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 5.2e-90 335.1 285 66.7
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 5.2e-90 335.1 285 66.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.2e-89 334.0 217 80.2
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 2.0e-89 333.2 285 66.3
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 2.6e-89 332.8 283 65.7
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 9.8e-89 330.9 280 67.9
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.8e-88 328.6 267 67.0
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.1e-87 327.4 279 66.7
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 4.1e-87 325.5 283 65.0
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.1e-87 325.5 284 65.1
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 7.0e-87 324.7 283 63.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 4.5e-86 322.0 283 63.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 5.9e-86 321.6 282 62.8
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.9e-86 321.6 282 63.5
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 5.9e-86 321.6 311 59.5
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.7e-85 320.1 286 64.0
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.9e-85 319.3 282 62.4
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.9e-85 319.3 282 62.8
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 3.8e-85 318.9 282 62.4
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 3.8e-85 318.9 283 65.0
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.0e-85 318.5 238 75.6
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 6.5e-85 318.2 282 62.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.5e-85 318.2 267 67.0
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.9e-84 316.6 282 62.4
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.9e-84 316.6 282 62.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.2e-84 315.8 237 74.7
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.2e-84 315.5 282 62.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 4.2e-84 315.5 282 62.1
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.6e-83 313.5 282 62.1
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.6e-83 313.5 237 73.4
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.1e-83 313.2 282 61.3
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 2.7e-83 312.8 322 59.6
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.7e-83 312.8 282 61.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.7e-83 312.8 284 63.4
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 3.6e-83 312.4 283 62.5
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.6e-83 312.4 282 61.7
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.7e-83 312.0 282 61.7
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 6.1e-83 311.6 282 62.1
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 4.0e-82 308.9 283 62.2
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 4.0e-82 308.9 283 61.8
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 4.0e-82 308.9 283 62.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 8.8e-82 307.8 284 62.7
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.5e-81 307.0 286 62.9
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.5e-81 307.0 284 63.4
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.0e-81 306.6 287 60.3
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.7e-80 303.5 285 61.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.2e-80 303.1 284 61.6
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.7e-80 302.4 284 61.3
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.9e-80 302.0 284 60.9
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.3e-80 301.6 285 61.4
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 8.3e-80 301.2 331 54.4
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.3e-80 301.2 237 71.3
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.4e-79 300.4 179 86.6
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.1e-79 298.9 299 59.9
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.0e-79 298.1 285 59.6
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-78 297.4 267 61.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.6e-78 297.0 287 62.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 7.7e-78 294.7 237 70.5
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.7e-77 293.5 319 55.2
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.3e-77 293.1 237 69.2
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.3e-77 293.1 299 59.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 8.6e-77 291.2 272 62.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.1e-76 290.8 243 67.5
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.5e-76 290.4 243 67.1
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.9e-76 290.0 320 55.3
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.5e-76 289.7 243 66.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 3.3e-76 289.3 239 66.1
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 5.6e-76 288.5 237 66.2
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.5e-76 287.7 243 66.7
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 8.0e-75 284.6 276 59.8
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 1.8e-74 283.5 285 56.1
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 2.3e-74 283.1 285 55.8
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.4e-71 273.1 218 69.3
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 5.0e-69 265.4 199 70.4
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.1e-68 264.2 173 79.8
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 9.5e-68 261.2 237 61.6
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.5e-60 236.5 210 62.4
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.8e-58 230.3 237 59.9
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 2.2e-56 223.4 229 55.5
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 9.2e-55 218.0 135 82.2
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 6.8e-50 201.8 196 61.2
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.9e-44 183.7 196 53.6
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-41 174.5 130 68.5
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.0e-41 173.7 167 60.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.3e-37 160.2 190 52.6
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.9e-34 148.7 211 48.3
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 9.0e-34 148.3 153 56.9
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.7e-32 144.1 221 45.7
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.2e-32 143.7 236 46.2
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.5e-28 131.0 175 41.1
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 6.9e-26 122.1 99 65.7
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.2e-25 121.3 183 37.2
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 7.1e-23 112.1 186 34.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 4.6e-22 109.4 82 70.7
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.8e-21 107.5 190 34.7
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 5.1e-21 105.9 190 35.3
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.5e-20 103.6 178 44.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.1e-12 78.2 65 61.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 3.7e-11 73.2 104 47.1
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.0e-08 65.1 200 30.0
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 7.2e-07 58.9 39 82.1
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 7.2e-07 58.9 39 82.1
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.6e-06 57.8 105 40.0
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 6.1e-06 55.8 90 45.6


User provided reference genes

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