Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 1.7e-115 419.5 230 100.0
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 5.3e-101 371.3 231 84.4
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 2.0e-87 326.2 231 74.0
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 1.2e-84 317.0 241 73.0
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 3.5e-84 315.5 230 73.0
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 3.5e-84 315.5 230 74.3
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 2.8e-78 295.8 234 69.2
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 1.4e-77 293.5 237 70.0
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 4.5e-76 288.5 234 70.1
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 2.7e-73 279.3 244 64.8
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 2.7e-73 279.3 250 62.4
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 6.1e-73 278.1 238 63.9
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 1.8e-72 276.6 252 63.9
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 3.0e-72 275.8 246 63.8
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 3.0e-72 275.8 192 74.5
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 5.2e-72 275.0 186 75.3
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 5.2e-72 275.0 234 70.5
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 5.2e-72 275.0 232 68.1
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 6.8e-72 274.6 249 63.9
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 8.8e-72 274.2 242 61.6
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 2.6e-71 272.7 241 64.3
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 2.6e-71 272.7 244 63.9
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.7e-70 268.9 246 63.4
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 1.1e-69 267.3 246 63.4
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 1.1e-69 267.3 234 65.4
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 1.8e-69 266.5 255 60.8
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 1.8e-69 266.5 232 64.2
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 3.1e-69 265.8 234 65.4
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 3.1e-69 265.8 247 60.7
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 9.1e-69 264.2 240 65.8
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 1.6e-68 263.5 239 64.9
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 1.6e-68 263.5 200 69.0
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.0e-68 263.1 239 64.9
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 5.9e-68 261.5 235 61.3
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 5.9e-68 261.5 161 79.5
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 5.9e-68 261.5 189 70.9
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 7.7e-68 261.2 224 63.8
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 7.7e-68 261.2 235 61.3
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 1.0e-67 260.8 203 67.5
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 1.3e-67 260.4 231 65.4
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 1.7e-67 260.0 209 65.6
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 2.3e-67 259.6 237 66.2
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 6.6e-67 258.1 194 70.1
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 6.6e-67 258.1 230 62.2
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 8.6e-67 257.7 248 58.9
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.1e-66 257.3 155 81.9
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 1.1e-66 257.3 204 66.2
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 1.6e-65 253.4 156 79.5
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 2.8e-65 252.7 200 68.5
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 8.0e-65 251.1 225 60.9
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 1.8e-64 250.0 216 63.9
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 2.3e-64 249.6 226 62.4
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.2e-64 248.4 234 62.0
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 8.9e-64 247.7 189 67.2
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 3.4e-63 245.7 187 68.4
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 5.7e-63 245.0 229 60.3
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.1e-61 240.7 292 51.0
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 7.3e-58 228.0 168 72.0
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 2.8e-57 226.1 159 71.1
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 5.2e-56 221.9 192 61.5
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 3.6e-49 199.1 160 62.5
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 1.1e-48 197.6 166 59.0
Lj4C838G8 Lonicera japonica HOM05D007927 ORTHO05D010029 1.4e-48 197.2 234 52.1
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 3.5e-44 182.6 171 55.0
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 1.1e-42 177.6 96 85.4
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 2.7e-36 156.4 233 46.4
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 6.2e-33 145.2 89 80.9
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 7.1e-29 131.7 135 54.8
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 5.1e-27 125.6 135 52.6
Cre01.g055151 Chlamydomonas reinhardtii HOM05D007927 ORTHO05D010029 7.8e-20 101.7 137 39.4
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 1.2e-15 87.8 103 47.6
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 5.8e-15 85.5 103 49.5
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.8e-15 85.5 99 48.5
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.9e-15 84.7 46 87.0
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.9e-14 82.4 47 83.0
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 1.4e-13 80.9 58 72.4
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 5.4e-13 79.0 47 78.7
Sabra07G0086200 Salix brachista HOM05D007927 ORTHO05D010029 2.1e-12 77.0 146 42.5
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 6.0e-12 75.5 47 78.7
Pp3c2_6800 Physcomitrium patens HOM05D019817 ORTHO05D016515 1.5e-07 60.8 190 27.9
Mapoly0178s0020 Marchantia polymorpha HOM05D019817 ORTHO05D016515 2.9e-06 56.6 90 34.4
SEGI_14611 Sequoiadendron giganteum HOM05D019817 ORTHO05D016515 4.9e-06 55.8 94 31.9
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 6.4e-06 55.5 29 89.7


User provided reference genes

Program Settings