Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.9e-163 577.0 286 100.0
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.5e-100 369.4 259 75.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.6e-75 287.0 298 58.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.5e-56 221.9 279 47.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.7e-54 216.5 291 43.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.9e-53 212.6 277 44.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.1e-53 212.2 277 44.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.3e-51 205.3 294 44.6
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 9.0e-50 201.4 284 42.6
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.7e-48 197.2 296 43.2
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.9e-48 196.4 262 43.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 6.5e-48 195.3 291 41.2
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.4e-47 191.4 289 43.9
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.8e-45 187.2 287 45.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.3e-43 181.0 280 41.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.8e-43 179.1 292 40.4
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.8e-43 179.1 283 41.3
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.4e-42 176.8 290 44.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 9.1e-42 174.9 287 41.8
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.0e-41 173.7 289 41.9
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 7.7e-41 171.8 259 42.1
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.2e-40 170.2 279 42.3
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-39 167.9 277 42.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.5e-39 165.6 281 40.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 7.2e-39 165.2 263 45.2
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 8.8e-37 158.3 264 44.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 7.4e-36 155.2 296 39.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 7.0e-34 148.7 277 37.5
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-33 146.7 261 39.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.5e-33 146.0 253 40.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.5e-33 146.0 264 40.2
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.9e-33 145.6 266 35.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.3e-32 144.4 266 38.3
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.3e-32 144.4 287 36.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.9e-32 143.3 288 37.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.0e-32 142.5 283 37.5
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-31 141.0 261 39.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 9.4e-31 138.3 273 37.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.6e-30 136.3 276 36.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 4.7e-30 136.0 278 33.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.8e-29 134.0 278 33.5
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.3e-29 133.7 257 37.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.0e-29 133.3 262 37.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.0e-29 133.3 259 37.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.2e-29 132.5 286 37.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 6.7e-29 132.1 251 40.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.0e-28 130.6 114 66.7
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.6e-28 130.2 266 37.2
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.4e-28 129.4 255 36.1
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 9.7e-28 128.3 275 35.3
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.3e-27 127.9 252 35.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.2e-27 127.1 264 35.6
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.2e-27 127.1 286 35.3
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.2e-27 127.1 249 33.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.7e-27 126.3 110 64.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.3e-27 125.6 279 34.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 6.3e-27 125.6 281 36.3
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.2e-27 125.2 249 37.3
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.2e-27 125.2 263 36.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.4e-26 124.4 259 36.7
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.8e-26 124.0 278 36.7
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 2.4e-26 123.6 268 34.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.1e-26 122.9 245 36.3
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 4.1e-26 122.9 291 34.4
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 5.3e-26 122.5 263 33.1
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 9.1e-26 121.7 272 34.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.1e-26 121.7 249 36.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.1e-26 121.7 265 35.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.2e-25 121.3 279 35.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.5e-25 119.8 250 36.8
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.5e-25 119.8 250 36.8
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 4.5e-25 119.4 248 35.5
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-24 117.9 278 34.2
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.9e-24 116.7 242 34.7
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 3.8e-24 116.3 254 36.2
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 6.5e-24 115.5 259 35.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 6.5e-24 115.5 250 34.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.2e-23 112.8 284 32.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 4.2e-23 112.8 233 34.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.5e-23 112.5 261 33.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.5e-23 112.5 279 34.1
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.5e-23 112.5 269 33.8
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.4e-23 111.7 247 32.8
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.6e-22 110.9 258 34.9
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-22 110.9 252 36.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.7e-22 110.2 270 33.3
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.6e-22 109.8 247 32.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.7e-22 109.4 278 33.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 8.0e-22 108.6 269 33.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.2e-21 105.9 248 33.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.8e-21 105.5 272 34.6
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 8.8e-21 105.1 264 33.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.5e-20 104.4 251 32.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 9.8e-20 101.7 262 33.2
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 3.7e-19 99.8 262 35.9
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.7e-19 99.8 132 47.0
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.8e-19 99.4 231 33.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.8e-19 99.4 299 31.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 4.8e-19 99.4 269 32.3
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.1e-18 98.2 86 61.6
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-18 97.4 223 33.6
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.8e-18 97.4 254 33.5
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.6e-17 94.4 183 37.2
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 5.9e-17 92.4 239 33.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.0e-16 91.7 283 30.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-16 91.3 266 32.0
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.7e-16 90.9 278 30.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.2e-16 90.5 267 31.5
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.9e-16 90.1 283 30.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 3.8e-16 89.7 259 31.3
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.5e-16 89.0 252 30.6
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.5e-16 89.0 125 43.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 8.5e-16 88.6 222 32.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-15 88.2 238 29.8
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.2e-15 86.7 262 27.9
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-15 85.9 195 32.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.5e-15 85.9 265 30.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.2e-14 84.7 248 29.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-14 84.3 267 27.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 4.7e-14 82.8 279 29.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 8.0e-14 82.0 251 30.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 8.0e-14 82.0 238 31.9
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.0e-13 81.6 99 41.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-13 81.6 222 32.4
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-13 80.9 252 26.6
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-13 79.7 197 31.5
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.2e-12 78.2 146 33.6
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.5e-12 77.8 65 64.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.6e-12 77.0 132 39.4
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.4e-12 76.6 72 54.2
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.4e-12 76.3 76 51.3
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 5.7e-12 75.9 137 38.0
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.7e-12 75.9 82 45.1
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.5e-12 75.5 228 29.4
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.7e-11 73.2 123 38.2
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 6.3e-11 72.4 134 35.1
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.1e-10 71.6 216 28.7
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-10 71.6 130 36.9
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-10 70.9 232 28.9
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 4.1e-10 69.7 67 47.8
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.4e-10 69.3 67 47.8
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.4e-10 69.3 129 36.4
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 7.0e-10 68.9 175 35.4
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.2e-10 68.6 67 47.8
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 9.2e-10 68.6 66 51.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.2e-10 68.6 66 51.5
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.2e-10 68.6 66 51.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.2e-10 68.6 66 51.5
Actinidia32073 Actinidia chinensis HOM05D003937 ORTHO05D012928 2.0e-09 67.4 117 41.9
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.0e-09 67.4 66 50.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 3.5e-09 66.6 107 38.3
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 3.5e-09 66.6 68 48.5
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.5e-09 66.2 137 33.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 7.8e-09 65.5 67 49.3
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.0e-08 65.1 70 47.1
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.3e-08 64.7 67 46.3
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.3e-08 64.7 67 47.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.9e-08 63.5 70 45.7
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.9e-08 63.5 70 45.7
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 3.8e-08 63.2 133 33.1
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.8e-08 63.2 228 28.1
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 6.6e-08 62.4 67 47.8
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 8.6e-08 62.0 68 44.1
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.5e-07 61.2 67 49.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.5e-07 60.5 67 47.8
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.3e-07 59.7 268 26.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.6e-06 57.8 55 58.2
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-06 57.4 238 26.5
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.8e-06 57.0 59 47.5
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.8e-06 57.0 59 49.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.0e-06 55.5 68 44.1


User provided reference genes

Program Settings