Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1675.2 807 100.0
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1544.3 843 88.6
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1399.4 806 81.9
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1388.2 807 83.0
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1371.7 823 78.9
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1353.6 758 85.5
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1303.5 807 76.8
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1285.4 807 75.7
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1278.8 806 74.7
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1265.4 807 73.6
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1263.8 807 74.0
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1260.0 809 73.4
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1258.4 806 73.1
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 806 73.3
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1251.9 801 73.7
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1250.0 806 73.4
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1249.6 804 73.3
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1246.1 807 72.4
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1244.6 808 73.0
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1243.8 803 72.7
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1243.4 806 72.6
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1241.5 807 72.5
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1240.3 804 72.9
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1239.9 808 71.2
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1239.2 808 72.8
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1238.4 803 72.6
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1236.5 806 71.1
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1234.6 807 72.9
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1229.5 857 69.1
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1228.0 841 70.4
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1222.6 820 71.3
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1222.2 807 70.4
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1218.0 838 68.6
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1215.3 807 72.0
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1215.3 808 72.2
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1211.4 806 71.7
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1205.7 806 71.5
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1204.9 808 71.8
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1203.3 809 70.8
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1201.4 806 71.2
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1201.0 817 70.5
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1199.5 889 66.4
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1198.0 806 70.8
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1194.1 804 69.5
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1192.9 809 71.7
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1189.5 807 70.3
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1189.1 807 70.4
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1185.6 836 68.9
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1184.5 820 68.9
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1179.1 773 72.1
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1176.0 807 68.9
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1171.8 807 68.8
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1169.1 808 71.4
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1169.1 807 68.5
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1168.3 807 68.6
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1160.2 808 69.2
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1143.3 850 64.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 804 67.0
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1131.7 810 66.5
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 803 66.4
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1129.8 809 67.1
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1128.2 810 66.5
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1124.0 807 66.4
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1123.6 801 65.8
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1122.1 807 66.2
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1118.2 807 66.2
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1114.8 803 66.3
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1110.5 810 65.2
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 804 65.2
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1105.5 808 66.2
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1097.0 808 66.0
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1095.5 810 64.7
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1087.0 792 65.5
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1084.7 851 62.9
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1084.7 811 65.4
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1081.6 810 64.6
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1081.6 810 64.6
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 5.5e-312 1073.5 801 63.4
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.1e-311 1073.2 859 62.0
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 5.1e-308 1060.8 808 64.4
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 9.6e-307 1056.6 806 62.9
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.6e-306 1055.8 809 60.8
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.2e-303 1045.4 808 61.9
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.0e-300 1036.6 713 70.1
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 8.2e-298 1026.9 808 62.5
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 4.5e-288 994.6 719 66.9
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 3.0e-284 981.9 596 77.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 5.3e-281 971.1 731 64.0
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.3e-260 902.5 613 71.0
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.4e-259 898.7 809 54.3
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.1e-257 892.1 614 70.2
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 6.8e-228 794.7 615 61.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 2.1e-216 756.5 609 61.2
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.8e-204 716.8 830 45.1
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.2e-203 714.1 830 45.9
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.1e-193 681.0 461 71.1
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 5.5e-193 678.7 825 43.6
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 9.3e-177 624.8 532 58.3
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.1e-172 609.8 457 66.3
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.9e-162 576.6 401 72.8
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 3.1e-148 530.0 584 46.1
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.0e-147 527.3 459 56.0
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.1e-145 521.5 372 67.2
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 6.6e-138 495.7 446 53.8
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.8e-133 480.3 315 71.4
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 8.9e-127 458.8 466 50.2
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.6e-115 421.4 340 63.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.9e-109 400.6 306 68.6
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 2.0e-94 351.3 193 77.7
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.3e-81 307.0 265 57.4
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 2.1e-80 304.7 237 64.1
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.4e-70 270.8 146 78.8
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 7.6e-70 269.6 509 35.2
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.6e-67 261.9 149 79.2
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 2.7e-59 234.6 123 78.9
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 6.9e-55 219.9 193 49.7
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.9e-52 211.8 854 26.2
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 3.1e-47 194.5 144 56.2
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.0e-41 175.3 191 49.7
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.4e-39 168.3 95 73.7
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 3.7e-32 144.4 92 68.5
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.2e-22 112.8 54 85.2
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.3e-18 98.6 76 59.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 6.6e-13 80.5 127 34.6
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 9.8e-09 66.6 156 32.7
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 2.2e-08 65.5 154 29.9
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 1.9e-07 62.4 169 32.0
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 3.2e-07 61.6 275 26.9
Nitab4.5_0004074g0030 Nicotiana tabacum HOM05D000563 ORTHO05D000536 4.1e-07 61.2 156 30.1
Os08g0227400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.4e-07 60.8 188 27.1
Nitab4.5_0005829g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 7.0e-07 60.5 156 29.5
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 9.2e-07 60.1 169 29.6
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 2.7e-06 58.5 52 48.1
Os08g0228200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.6e-06 57.8 160 26.9
TAR623G1349 Trochodendron aralioides HOM05D000563 ORTHO05D000536 4.6e-06 57.8 151 31.8
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.0e-06 57.4 142 28.2
TAR369G0361 Trochodendron aralioides HOM05D000563 ORTHO05D000536 6.0e-06 57.4 175 28.6


User provided reference genes

Program Settings