Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 8.7e-254 879.8 434 100.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 7.5e-197 690.6 387 86.0
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 9.1e-195 683.7 419 82.3
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.9e-193 678.7 387 86.0
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 6.3e-188 661.0 418 79.4
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.6e-186 656.4 387 82.7
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 7.7e-186 654.1 383 81.5
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.3e-180 636.7 387 80.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.8e-180 635.6 392 79.1
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 2.7e-178 629.0 431 72.4
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 8.6e-177 624.0 385 78.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.2e-175 620.2 387 78.3
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.3e-174 615.9 385 77.9
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.3e-174 615.9 385 77.9
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 4.0e-174 615.1 387 75.2
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.9e-174 614.0 386 75.9
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.2e-173 613.6 389 75.8
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 5.8e-173 611.3 390 75.1
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.5e-173 610.9 386 75.6
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.3e-172 610.1 375 76.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.3e-172 610.1 415 72.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.7e-172 609.8 386 75.4
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 6.4e-172 607.8 389 74.8
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 5.4e-171 604.7 388 75.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.2e-170 603.6 387 75.2
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.6e-170 603.2 383 77.0
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.0e-170 602.8 391 76.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.0e-170 602.8 389 76.6
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 3.5e-170 602.1 381 76.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 4.6e-170 601.7 378 77.8
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.0e-170 601.3 389 74.8
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 7.8e-170 600.9 384 76.0
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.3e-169 600.1 381 75.6
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.3e-169 600.1 396 74.5
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.0e-169 599.0 388 74.7
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.0e-169 599.0 388 74.7
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.9e-169 598.6 389 73.5
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 5.0e-169 598.2 428 69.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.1e-168 597.0 389 73.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.3e-168 595.5 389 74.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 4.3e-168 595.1 385 74.5
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 5.6e-168 594.7 389 74.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.6e-167 593.2 389 73.3
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-166 590.5 390 73.8
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.4e-166 590.1 386 74.9
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 3.1e-166 589.0 388 73.5
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 5.2e-166 588.2 399 72.4
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 8.9e-166 587.4 430 68.6
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.2e-165 587.0 389 72.8
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.5e-165 586.6 386 72.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.0e-165 586.3 390 72.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 2.0e-165 586.3 388 72.2
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.4e-165 585.5 388 74.0
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.4e-165 585.5 386 72.8
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.5e-165 584.3 387 73.4
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 8.3e-164 580.9 387 73.6
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-163 580.5 390 72.6
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.4e-163 580.1 387 72.6
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.1e-163 578.6 387 72.1
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 7.0e-163 577.8 389 72.5
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.7e-161 573.2 387 72.1
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.1e-161 571.6 381 72.4
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 6.6e-161 571.2 386 71.5
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.3e-160 568.5 401 70.3
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 4.3e-160 568.5 387 70.3
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 7.3e-160 567.8 391 71.9
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 9.5e-160 567.4 388 71.6
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.1e-159 566.2 381 71.7
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 6.2e-159 564.7 385 70.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.1e-158 563.9 389 69.9
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 8.9e-158 560.8 418 67.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 5.8e-157 558.1 386 70.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.7e-156 556.6 374 70.6
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.7e-156 556.6 386 70.5
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 4.9e-156 555.1 376 69.9
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-155 553.5 376 69.4
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.4e-155 553.5 376 69.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.4e-155 553.5 382 69.9
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 2.4e-155 552.7 385 68.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 5.4e-155 551.6 376 69.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.2e-154 550.4 376 68.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.2e-154 550.4 387 68.7
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.7e-154 549.3 300 87.7
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 3.5e-154 548.9 400 69.2
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 6.0e-154 548.1 386 68.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 6.0e-154 548.1 387 68.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.0e-153 547.4 374 68.4
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.3e-153 546.2 398 67.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.9e-153 545.4 400 69.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 4.7e-151 538.5 387 69.0
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 5.2e-150 535.0 374 67.4
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.7e-148 530.0 437 62.9
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 3.8e-148 528.9 382 67.8
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 8.4e-148 527.7 382 68.1
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.9e-145 518.8 338 71.9
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 2.4e-142 509.6 341 71.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 3.1e-142 509.2 413 62.5
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.3e-140 503.8 341 69.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.4e-139 500.4 344 68.9
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 5.6e-136 488.4 317 71.6
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 5.6e-136 488.4 340 68.8
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 6.2e-135 485.0 387 64.6
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 9.9e-133 477.6 294 76.5
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 9.9e-133 477.6 379 63.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 3.2e-131 472.6 382 62.0
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 5.4e-131 471.9 384 61.5
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.8e-129 466.8 376 62.5
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 9.6e-128 461.1 284 75.4
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 6.4e-124 448.4 426 54.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.1e-123 447.6 348 61.8
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.1e-122 443.4 298 68.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.9e-122 441.4 298 68.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.2e-119 431.4 298 67.1
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.4e-118 429.9 280 72.9
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 6.1e-114 415.2 236 85.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.9e-101 372.1 234 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.9e-99 367.1 296 59.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.3e-97 360.1 297 56.6
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.7e-96 355.5 219 74.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 9.1e-94 348.2 279 60.6
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 5.2e-89 332.4 388 45.6
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 7.7e-77 292.0 202 69.8
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 8.3e-71 271.9 311 45.3
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.3e-68 264.6 242 52.1
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.9e-67 260.8 193 65.8
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.1e-62 243.0 187 61.0
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 5.4e-62 242.7 230 57.0
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 5.0e-60 236.1 150 76.0
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 5.6e-59 232.6 167 64.1
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-47 193.7 121 72.7
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 8.6e-44 182.2 135 60.0
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.4e-38 164.9 129 64.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.1e-37 161.0 140 51.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 8.6e-36 155.6 139 59.7
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 5.2e-33 146.4 180 43.9
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-31 141.7 156 54.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.4e-25 121.7 92 69.6
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.0e-25 120.2 350 28.3
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.0e-24 117.9 122 51.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 9.9e-24 115.5 258 31.4
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 3.9e-20 103.6 63 71.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 9.9e-16 89.0 58 70.7
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.9e-15 87.4 53 71.7
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.3e-12 77.8 58 58.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 5.8e-08 63.2 78 41.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 5.8e-08 63.2 78 41.0


User provided reference genes

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