Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.1e-129 465.7 230 100.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.8e-77 293.1 225 69.8
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.5e-63 246.9 232 58.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.6e-63 246.1 232 58.6
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 7.0e-61 238.0 218 61.5
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 5.9e-60 235.0 224 59.8
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 7.3e-58 228.0 228 54.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 8.3e-54 214.5 199 56.8
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.4e-53 213.8 198 58.6
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 6.0e-52 208.4 214 53.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.9e-51 205.7 221 53.4
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.5e-50 203.8 138 71.0
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 4.3e-50 202.2 212 53.3
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 7.3e-50 201.4 223 53.8
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.3e-50 201.4 200 54.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 9.5e-50 201.1 218 51.8
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.2e-49 200.7 191 57.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.6e-49 200.3 217 53.0
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.6e-49 199.1 215 52.1
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 3.6e-49 199.1 207 53.6
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 3.6e-49 199.1 225 51.1
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 4.7e-49 198.7 225 50.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 6.2e-49 198.4 219 51.6
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.1e-48 197.6 224 50.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-48 197.2 203 52.7
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.8e-48 196.8 221 52.9
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.3e-48 196.4 199 51.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.0e-48 195.7 193 56.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 6.8e-48 194.9 221 47.1
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.9e-48 194.5 197 50.3
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-47 194.1 230 47.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.2e-47 194.1 193 52.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.5e-47 193.7 208 53.4
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.0e-47 193.4 190 52.6
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 3.4e-47 192.6 212 50.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 9.8e-47 191.0 220 49.5
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 9.8e-47 191.0 223 48.0
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 9.8e-47 191.0 202 48.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.3e-46 190.7 206 52.4
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.7e-46 190.3 225 50.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 3.7e-46 189.1 202 49.5
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 4.9e-46 188.7 196 51.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.4e-46 188.3 197 51.8
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 8.3e-46 188.0 198 51.0
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.3e-46 188.0 199 50.3
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.1e-45 187.6 193 50.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.1e-45 187.6 198 51.5
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.4e-45 187.2 218 50.5
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.4e-45 187.2 200 51.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.9e-45 186.8 194 50.0
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.9e-45 186.8 194 49.0
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 2.4e-45 186.4 222 47.7
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.4e-45 186.4 193 50.8
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-45 186.0 216 48.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-45 186.0 216 48.1
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 4.1e-45 185.7 237 48.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-45 185.7 192 52.6
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 5.4e-45 185.3 196 51.5
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 5.4e-45 185.3 177 52.0
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 5.4e-45 185.3 200 50.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 7.0e-45 184.9 196 49.5
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 9.2e-45 184.5 196 52.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.1e-44 183.3 229 48.9
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.1e-44 183.3 199 49.2
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 2.7e-44 183.0 202 49.0
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 3.5e-44 182.6 214 45.8
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 4.6e-44 182.2 194 50.0
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 4.6e-44 182.2 194 51.0
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 6.0e-44 181.8 194 49.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 6.0e-44 181.8 193 50.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 7.8e-44 181.4 194 49.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 7.8e-44 181.4 193 48.7
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.0e-43 181.0 193 51.3
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.0e-43 181.0 193 49.2
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.3e-43 180.6 194 47.9
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-43 180.6 201 47.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-43 180.6 201 47.8
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.7e-43 180.3 199 48.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.7e-43 180.3 202 49.5
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.3e-43 179.9 194 49.5
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 3.9e-43 179.1 223 45.3
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.9e-43 179.1 217 47.5
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 3.9e-43 179.1 219 45.7
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.1e-43 178.7 227 45.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 6.6e-43 178.3 215 45.6
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 6.6e-43 178.3 220 45.9
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.9e-42 176.8 193 49.7
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 3.3e-42 176.0 220 45.5
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 4.3e-42 175.6 171 52.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 5.6e-42 175.3 215 47.0
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 5.6e-42 175.3 199 46.7
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.5e-42 174.5 130 65.4
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.2e-41 174.1 212 47.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.6e-41 172.6 184 56.5
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 4.7e-41 172.2 195 49.2
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.7e-41 172.2 204 47.1
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.7e-41 172.2 218 45.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 8.1e-41 171.4 219 45.7
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 8.1e-41 171.4 217 45.2
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.1e-40 171.0 199 49.2
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.4e-40 170.6 204 48.0
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-40 170.2 219 45.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.8e-40 170.2 217 48.4
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.8e-40 170.2 223 44.8
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-40 169.9 215 46.0
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-40 169.9 215 47.0
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.1e-40 169.5 226 44.2
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.1e-40 169.5 196 48.5
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.0e-40 169.1 200 49.0
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-39 167.5 196 47.4
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.2e-39 167.5 222 45.5
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-39 167.5 226 42.9
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.5e-39 167.2 232 44.4
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-39 167.2 197 48.7
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.0e-39 166.8 227 45.4
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.4e-39 166.0 217 45.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 7.5e-39 164.9 228 43.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 9.9e-39 164.5 128 59.4
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.2e-38 163.3 209 45.9
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-38 163.3 214 45.8
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-38 162.9 220 43.2
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-38 162.9 220 43.2
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.7e-38 162.5 176 50.0
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.9e-38 162.2 216 44.4
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.4e-38 161.8 216 44.0
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 8.3e-38 161.4 218 42.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.1e-37 161.0 223 43.0
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.9e-37 160.2 203 46.3
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.2e-37 159.5 215 43.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 7.1e-37 158.3 228 38.6
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.7e-36 156.4 204 45.6
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.6e-36 155.6 203 42.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.3e-35 153.3 204 45.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.9e-35 152.5 239 41.0
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 6.6e-35 151.8 203 43.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 8.6e-35 151.4 211 42.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 8.6e-35 151.4 203 43.3
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.5e-34 150.6 196 40.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.9e-34 150.2 202 43.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.5e-34 149.8 234 40.6
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.5e-34 149.8 216 41.7
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.5e-34 149.8 234 41.0
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.4e-32 143.3 188 43.6
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.8e-32 141.7 153 52.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 7.6e-31 138.3 176 45.5
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.3e-30 137.5 232 38.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.3e-27 127.5 199 35.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.7e-27 127.1 196 37.2
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 7.3e-26 121.7 199 37.2
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 2.1e-25 120.2 96 59.4
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.9e-24 115.2 166 43.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.3e-22 110.9 108 48.1
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-19 101.3 111 45.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-19 100.9 111 45.0
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 3.0e-19 99.8 135 40.0
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.6e-19 98.6 61 83.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.3e-18 95.9 103 46.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.8e-17 93.2 84 50.0
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 6.2e-17 92.0 124 49.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-16 91.3 102 44.1
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.4e-16 90.9 141 44.7
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.4e-15 86.3 89 44.9
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 6.4e-14 82.0 131 32.1
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 6.4e-14 82.0 110 48.2
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.4e-13 80.9 125 38.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.4e-13 80.1 167 37.7
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.2e-13 79.7 154 36.4
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 7.1e-13 78.6 86 43.0
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-12 76.3 117 45.3
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-11 74.7 78 43.6
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-10 70.5 100 45.0
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 9.6e-10 68.2 61 50.8
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.3e-09 67.8 153 34.0
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 2.4e-08 63.5 123 39.8


User provided reference genes

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