Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.2e-217 758.1 370 100.0
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-153 545.0 388 76.0
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.7e-139 499.2 404 67.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.1e-139 498.0 382 69.9
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 2.5e-129 466.1 382 66.0
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.1e-127 460.7 383 66.6
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 5.5e-116 421.8 378 61.1
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 5.5e-116 421.8 378 61.1
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 5.7e-113 411.8 374 59.9
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.3e-112 410.6 409 58.9
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.2e-112 409.8 380 60.3
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 6.3e-112 408.3 409 58.7
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.4e-111 407.1 375 59.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 3.1e-111 406.0 379 59.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 4.1e-111 405.6 384 59.4
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.6e-110 402.9 351 61.3
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.5e-110 402.5 377 59.4
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.5e-110 402.5 382 58.1
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 3.8e-109 399.1 381 57.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.1e-108 397.5 367 59.4
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.1e-108 397.5 382 57.9
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.9e-108 396.7 381 57.0
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.9e-108 396.7 357 60.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-108 396.4 382 57.1
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 3.2e-108 396.0 382 58.1
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 3.2e-108 396.0 350 60.9
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.2e-108 395.6 367 58.6
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 5.5e-108 395.2 351 60.4
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 7.2e-108 394.8 346 61.0
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 7.2e-108 394.8 352 60.2
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 9.4e-108 394.4 345 60.9
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 9.4e-108 394.4 345 60.9
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.6e-107 393.7 345 61.4
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.7e-107 392.9 382 56.0
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.7e-107 392.9 350 60.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.1e-107 391.7 382 57.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 8.0e-107 391.3 351 60.4
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.0e-106 391.0 384 58.1
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.0e-106 391.0 350 60.3
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.8e-106 390.2 333 61.9
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 3.0e-106 389.4 351 59.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 8.8e-106 387.9 382 55.8
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.2e-105 387.5 373 57.1
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.0e-105 386.7 386 57.3
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.6e-105 386.3 343 61.5
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.6e-105 386.3 386 57.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.6e-105 386.3 376 56.9
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 3.4e-105 386.0 380 56.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 4.4e-105 385.6 374 57.0
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 5.7e-105 385.2 383 56.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.8e-105 384.4 329 61.4
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.7e-104 383.6 384 56.5
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.2e-104 383.3 382 55.2
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 2.8e-104 382.9 381 55.6
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.8e-104 382.9 378 56.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.8e-104 382.1 389 56.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.1e-103 380.9 378 55.8
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.4e-103 379.8 389 54.8
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 7.0e-103 378.3 377 56.0
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 9.1e-103 377.9 376 55.9
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 9.1e-103 377.9 376 55.9
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 2.0e-102 376.7 374 56.1
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.7e-102 376.3 377 55.2
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.5e-102 375.9 373 56.3
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.5e-102 375.9 376 55.9
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 5.9e-102 375.2 374 56.4
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.7e-102 374.8 368 54.9
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 7.7e-102 374.8 375 54.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.7e-101 373.6 352 56.5
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-101 372.5 367 55.6
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 8.5e-101 371.3 306 64.1
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.5e-100 370.5 379 55.1
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-100 370.5 367 55.3
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.9e-100 370.2 379 55.1
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.5e-100 369.8 352 57.1
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.2e-100 369.4 416 53.1
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 3.2e-100 369.4 334 59.9
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 4.2e-100 369.0 370 55.9
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 5.5e-100 368.6 367 54.8
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.2e-100 368.2 375 54.7
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 9.4e-100 367.9 339 57.8
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.6e-99 367.1 416 52.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 6.1e-99 365.2 367 55.9
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.4e-98 364.0 339 58.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 2.3e-98 363.2 297 63.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 4.0e-98 362.5 366 55.2
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 8.8e-98 361.3 367 55.6
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 8.8e-98 361.3 368 55.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.3e-96 357.5 379 52.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.1e-95 352.4 360 54.7
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 6.6e-93 345.1 303 60.1
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.5e-92 343.2 300 59.7
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 3.3e-92 342.8 337 55.8
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.2e-92 341.7 348 54.0
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 7.2e-92 341.7 364 51.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.6e-91 340.5 380 52.4
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.0e-90 337.8 384 53.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.0e-90 337.8 352 51.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.4e-90 337.4 309 58.3
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 5.2e-90 335.5 335 54.0
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 4.4e-89 332.4 350 54.3
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 8.3e-88 328.2 327 56.3
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.8e-87 327.0 378 51.1
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 7.0e-87 325.1 309 61.5
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 3.5e-86 322.8 346 50.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 8.6e-85 318.2 337 52.8
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-83 313.5 355 50.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-81 306.2 331 51.7
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.4e-81 305.8 349 47.6
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.3e-80 304.3 332 50.6
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 3.7e-80 302.8 326 52.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.2e-79 299.7 361 49.0
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 5.0e-77 292.4 339 47.2
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.6e-77 292.0 305 53.8
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.3e-76 288.5 326 48.8
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.4e-74 284.3 251 61.4
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 4.0e-74 282.7 322 51.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 8.3e-72 275.0 338 46.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.9e-71 273.9 386 45.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.4e-71 272.3 235 63.8
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 7.1e-71 271.9 329 45.3
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 4.6e-70 269.2 243 59.7
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.3e-69 267.7 307 51.8
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.7e-69 267.3 354 47.7
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 7.3e-68 261.9 334 43.7
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 2.4e-63 246.9 340 42.9
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 8.1e-59 231.9 249 54.2
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 8.1e-59 231.9 220 57.3
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 5.1e-53 212.6 121 85.1
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 5.1e-53 212.6 121 85.1
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.3e-52 209.5 145 73.1
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 5.6e-52 209.1 116 85.3
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.3e-51 208.0 204 56.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.0e-49 200.7 214 50.0
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 2.7e-46 190.3 242 46.3
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.3e-45 187.2 213 50.2
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-42 177.9 233 46.4
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.9e-40 170.2 324 34.3
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.8e-37 161.0 122 66.4
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 4.9e-32 142.9 174 48.3
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.2e-30 138.3 116 60.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.7e-28 129.4 210 39.5
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.4e-28 129.0 126 54.0
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.6e-27 127.9 77 84.4
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.1e-27 127.5 192 37.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.6e-25 120.6 260 34.2
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.0e-24 116.3 65 86.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.9e-23 114.4 154 44.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.7e-22 110.5 111 53.2
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.9e-22 109.0 72 75.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 3.9e-21 106.7 88 61.4
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.9e-20 104.4 84 59.5
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 6.3e-19 99.4 59 78.0
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.1e-18 98.6 55 85.5
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.1e-18 98.6 55 85.5
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 8.5e-16 89.0 259 28.6
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-15 87.8 58 79.3
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-14 84.3 106 50.0
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 3.0e-13 80.5 46 78.3
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 4.5e-09 66.6 197 32.5


User provided reference genes

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