Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 3.9e-128 461.5 232 100.0
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-127 459.1 232 99.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 6.5e-107 391.0 229 84.3
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.8e-102 374.8 228 81.6
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 6.3e-102 374.4 230 80.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-100 369.4 225 81.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-100 369.4 225 81.8
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.0e-99 367.1 233 77.3
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 4.2e-98 361.7 225 78.2
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.2e-97 360.1 227 75.8
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 4.7e-97 358.2 225 77.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-96 357.1 225 78.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.4e-96 356.7 227 74.4
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.5e-95 350.9 223 76.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.2e-94 349.4 232 72.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.8e-94 349.0 228 73.7
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-93 346.3 217 78.8
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.8e-93 346.3 231 74.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 3.1e-93 345.5 224 73.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 5.4e-93 344.7 228 75.4
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 7.0e-93 344.4 224 74.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 9.2e-93 344.0 222 75.7
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 3.5e-92 342.0 225 72.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.5e-92 342.0 217 76.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.9e-92 341.3 217 77.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 5.9e-92 341.3 225 73.3
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.0e-91 340.5 228 72.8
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.0e-91 340.5 228 72.8
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.3e-91 339.3 228 72.8
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 3.8e-91 338.6 229 72.1
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 3.8e-91 338.6 228 70.6
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.0e-91 338.2 228 72.4
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.6e-91 337.8 225 72.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 8.6e-91 337.4 225 69.8
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 8.6e-91 337.4 228 74.1
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.1e-90 337.0 222 73.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-90 336.7 224 72.8
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.5e-90 336.7 225 72.4
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.9e-90 336.3 225 70.7
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.9e-90 336.3 224 71.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.9e-90 336.3 221 74.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.5e-90 335.9 225 72.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.5e-90 335.9 223 73.1
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.5e-90 335.9 225 71.1
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.3e-90 335.1 222 70.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.3e-90 335.1 226 70.8
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 5.6e-90 334.7 232 71.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.6e-90 334.7 227 70.0
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 7.3e-90 334.3 216 74.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 9.5e-90 334.0 221 71.9
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 9.5e-90 334.0 223 70.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.2e-89 333.6 223 70.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.8e-89 332.4 221 71.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.0e-88 330.5 227 71.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 4.0e-88 328.6 225 72.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.2e-88 328.2 226 72.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 4.4e-87 325.1 231 68.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 5.7e-87 324.7 224 69.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.7e-87 324.7 255 63.5
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 7.5e-87 324.3 220 71.8
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.2e-86 322.8 223 70.0
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.9e-86 322.4 230 68.3
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.9e-86 322.4 224 67.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 6.4e-86 321.2 226 67.7
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.3e-86 320.9 220 70.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 8.3e-86 320.9 220 70.9
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.4e-85 320.1 225 69.3
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.8e-85 319.7 221 68.3
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.4e-85 319.3 226 68.1
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.2e-85 318.9 199 76.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 7.0e-85 317.8 220 70.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.2e-84 317.0 220 68.2
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.6e-84 316.6 248 66.1
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.7e-84 315.8 222 68.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 3.5e-84 315.5 224 67.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.5e-84 315.5 222 69.4
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.5e-84 315.5 220 69.1
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.9e-84 314.7 222 67.6
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.7e-83 313.2 224 69.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 3.0e-83 312.4 224 66.5
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.9e-83 312.0 222 67.6
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 6.6e-83 311.2 282 58.2
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.6e-83 311.2 224 67.0
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.5e-82 310.1 218 68.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.6e-82 308.1 224 65.2
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-81 307.0 218 67.4
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.2e-81 307.0 218 67.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.6e-81 306.6 232 64.2
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.8e-81 305.8 222 67.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.6e-81 305.4 196 73.5
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.7e-81 305.1 218 66.5
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-80 303.9 218 66.5
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-80 303.9 218 66.5
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 3.1e-80 302.4 218 67.0
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 6.8e-80 301.2 220 68.6
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.4e-79 298.9 206 70.4
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 4.4e-79 298.5 233 66.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-78 296.2 251 61.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.7e-78 295.4 228 62.7
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-77 293.5 227 63.0
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.4e-77 292.7 186 75.3
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 9.2e-77 290.8 225 64.4
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-76 290.4 227 62.1
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.0e-76 289.7 220 62.7
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.7e-76 289.3 217 63.1
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.7e-75 286.6 220 64.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-75 286.6 224 61.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.3e-75 286.2 218 64.2
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 5.0e-75 285.0 188 72.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.5e-74 283.5 221 67.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.5e-74 283.5 224 63.4
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.3e-74 282.3 225 60.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.3e-74 282.3 225 60.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.3e-74 281.2 218 63.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 9.5e-74 280.8 225 60.4
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 9.5e-74 280.8 225 60.4
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 9.5e-74 280.8 225 60.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.1e-73 279.6 221 63.8
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.1e-73 279.6 193 68.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.2e-73 278.1 213 63.8
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.5e-71 273.5 232 60.3
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.5e-71 273.5 232 60.3
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.7e-70 268.9 220 59.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 2.1e-68 263.1 200 62.0
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.9e-66 256.5 193 64.2
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.3e-66 255.8 213 57.7
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.4e-64 250.4 189 63.0
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 3.1e-64 249.2 153 77.1
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.2e-64 248.4 224 56.7
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.9e-62 242.7 151 76.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 6.4e-62 241.5 157 69.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.2e-61 239.2 239 55.2
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.5e-60 235.7 161 67.7
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.0e-59 234.2 208 54.8
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 3.1e-56 222.6 215 51.2
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.0e-56 222.2 174 64.4
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 4.0e-56 222.2 216 54.2
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 6.9e-56 221.5 216 52.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.8e-55 218.4 225 52.9
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 8.4e-54 214.5 180 58.3
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.7e-51 206.8 213 46.5
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-49 200.7 228 50.4
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.2e-47 194.1 152 56.6
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.9e-40 168.3 128 68.0
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.2e-39 167.5 183 45.4
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 3.4e-39 166.0 121 62.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.2e-37 159.5 121 61.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.6e-34 148.7 123 62.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 6.2e-33 145.2 90 77.8
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-31 140.2 157 52.9
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.0e-31 140.2 157 52.9
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.7e-30 137.1 86 77.9
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 5.5e-29 132.1 155 44.5
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 5.3e-24 115.5 208 34.1
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-20 104.4 66 78.8
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.8e-19 100.5 74 64.9
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 1.1e-16 91.3 75 57.3
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.4e-15 86.3 69 62.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.4e-15 86.3 90 48.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.3e-11 73.6 47 72.3
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 7.7e-07 58.5 38 65.8
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 3.8e-06 56.2 60 51.7


User provided reference genes

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