Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.9e-75 284.6 136 100.0
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.9e-75 284.6 136 100.0
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 2.2e-38 162.5 135 60.7
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 4.9e-38 161.4 94 77.7
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 5.5e-37 157.9 139 63.3
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 9.3e-37 157.1 138 59.4
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.2e-36 156.8 144 59.0
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-36 156.4 141 60.3
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-36 156.4 141 60.3
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 2.1e-36 156.0 135 59.3
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.0e-35 153.7 144 57.6
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.0e-35 153.7 144 58.3
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 1.3e-35 153.3 134 60.4
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.3e-35 153.3 120 62.5
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 5.1e-35 151.4 146 56.2
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 6.7e-35 151.0 136 56.6
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 6.7e-35 151.0 137 58.4
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 8.7e-35 150.6 126 61.1
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 8.7e-35 150.6 126 61.1
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 8.7e-35 150.6 138 57.2
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 8.7e-35 150.6 142 57.0
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.5e-34 149.8 91 73.6
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 1.5e-34 149.8 127 60.6
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.9e-34 149.4 95 72.6
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.9e-34 149.4 140 57.1
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.9e-34 149.4 137 56.9
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 2.5e-34 149.1 136 56.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 2.5e-34 149.1 136 56.6
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 2.5e-34 149.1 101 70.3
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 2.5e-34 149.1 146 58.9
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 2.5e-34 149.1 140 57.1
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 2.5e-34 149.1 138 60.1
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 3.3e-34 148.7 134 57.5
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 4.3e-34 148.3 104 65.4
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 5.6e-34 147.9 115 64.3
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 5.6e-34 147.9 104 65.4
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 5.6e-34 147.9 139 56.8
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 5.6e-34 147.9 140 57.1
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 5.6e-34 147.9 141 56.7
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 5.6e-34 147.9 141 56.0
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 5.6e-34 147.9 136 57.4
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 7.4e-34 147.5 90 73.3
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 9.6e-34 147.1 100 67.0
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 1.3e-33 146.7 146 56.8
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 1.3e-33 146.7 131 58.8
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.3e-33 146.7 141 55.3
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.6e-33 146.4 143 55.2
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 1.6e-33 146.4 103 66.0
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.6e-33 146.4 105 63.8
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 2.1e-33 146.0 139 55.4
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 2.1e-33 146.0 138 55.1
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 2.8e-33 145.6 138 58.0
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 2.8e-33 145.6 140 55.0
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 2.8e-33 145.6 101 68.3
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 2.8e-33 145.6 140 57.1
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 2.8e-33 145.6 102 64.7
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 2.8e-33 145.6 141 56.0
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 3.7e-33 145.2 99 65.7
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 3.7e-33 145.2 141 55.3
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 3.7e-33 145.2 143 57.3
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 4.8e-33 144.8 141 54.6
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 4.8e-33 144.8 137 56.2
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 4.8e-33 144.8 147 54.4
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 6.2e-33 144.4 90 70.0
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 6.2e-33 144.4 125 58.4
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 6.2e-33 144.4 125 58.4
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 6.2e-33 144.4 104 64.4
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 6.2e-33 144.4 138 55.8
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 8.2e-33 144.1 132 56.8
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 8.2e-33 144.1 118 58.5
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.4e-32 143.3 129 58.9
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 1.8e-32 142.9 130 57.7
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 1.8e-32 142.9 142 54.2
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.8e-32 142.9 144 56.9
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.4e-32 142.5 135 57.0
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 2.4e-32 142.5 134 54.5
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 3.1e-32 142.1 138 55.1
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 4.0e-32 141.7 125 54.4
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 4.0e-32 141.7 101 67.3
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 4.0e-32 141.7 134 55.2
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 5.3e-32 141.4 140 54.3
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 5.3e-32 141.4 137 56.2
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 2.0e-31 139.4 124 54.0
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 2.0e-31 139.4 100 62.0
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 2.0e-31 139.4 100 62.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 2.0e-31 139.4 101 64.4
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.6e-31 139.0 127 53.5
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-31 138.7 100 61.0
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-31 138.7 100 61.0
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 3.4e-31 138.7 100 61.0
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 3.4e-31 138.7 100 62.0
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 4.5e-31 138.3 100 61.0
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 4.5e-31 138.3 102 61.8
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 7.6e-31 137.5 101 66.3
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 7.6e-31 137.5 101 66.3
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 7.6e-31 137.5 130 50.8
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 1.0e-30 137.1 137 52.6
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 1.0e-30 137.1 137 51.8
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 1.0e-30 137.1 137 52.6
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 1.0e-30 137.1 100 60.0
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 1.3e-30 136.7 122 57.4
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.7e-30 136.3 146 48.6
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.7e-30 136.3 146 48.6
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 1.7e-30 136.3 110 65.5
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 2.2e-30 136.0 110 64.5
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 3.8e-30 135.2 100 59.0
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 3.7e-25 118.6 105 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 6.3e-25 117.9 101 54.5
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.8e-24 116.3 132 47.7
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.9e-24 114.4 100 53.0
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 1.2e-23 113.6 110 51.8
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 1.2e-23 113.6 76 68.4
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 2.0e-23 112.8 106 51.9
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.6e-23 112.5 73 67.1
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 5.9e-23 111.3 100 48.0
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 5.0e-22 108.2 123 42.3
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 6.5e-22 107.8 75 66.7
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 3.6e-20 102.1 113 46.9
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 3.9e-19 98.6 113 45.1
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 1.5e-18 96.7 103 44.7
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.2e-17 92.8 89 47.2
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 5.9e-15 84.7 56 64.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.6e-12 76.6 79 53.2
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 3.7e-09 65.5 83 49.4
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 2.6e-07 59.3 83 47.0
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 3.4e-07 58.9 65 47.7


User provided reference genes

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