Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0241000 Rhododendron simsii HOM05D002683 ORTHO05D007757 6.0e-58 227.3 112 100.0
Rhsim11G0097700 Rhododendron simsii HOM05D002683 ORTHO05D007757 1.4e-35 152.9 89 86.5
vmacro01580 Vaccinium macrocarpon HOM05D002683 ORTHO05D007757 2.0e-32 142.5 89 79.8
CSS0049007 Camellia sinensis var. sinensis HOM05D002683 ORTHO05D007757 2.6e-32 142.1 88 78.4
CiPaw.07G031200 Carya illinoinensis HOM05D002683 ORTHO05D007757 3.3e-32 141.7 88 78.4
Actinidia16874 Actinidia chinensis HOM05D002683 ORTHO05D007757 5.7e-32 141.0 86 81.4
Oeu053732.1 Olea europaea HOM05D002683 ORTHO05D007757 1.3e-31 139.8 89 75.3
Dinv30908 Davidia involucrata HOM05D002683 ORTHO05D007757 1.7e-31 139.4 87 80.5
COL.COLO4_05532 Corchorus olitorius HOM05D002683 ORTHO05D007541 3.7e-31 138.3 81 82.7
Lsat_1_v5_gn_5_148721 Lactuca sativa HOM05D002683 ORTHO05D007757 4.8e-31 137.9 89 70.8
Medtr1g084190 Medicago truncatula HOM05D002683 ORTHO05D007757 4.8e-31 137.9 88 75.0
Potri.013G007100 Populus trichocarpa HOM05D002683 ORTHO05D007757 4.8e-31 137.9 83 80.7
TPR.G2640 Trifolium pratense HOM05D002683 ORTHO05D007757 4.8e-31 137.9 86 76.7
Lj5g0023373 Lotus japonicus HOM05D002683 ORTHO05D007757 6.3e-31 137.5 88 77.3
Manes.09G178200 Manihot esculenta HOM05D002683 ORTHO05D007757 8.2e-31 137.1 83 79.5
TAR633G1207 Trochodendron aralioides HOM05D002683 ORTHO05D007757 8.2e-31 137.1 89 73.0
ECA234G1013 Erigeron canadensis HOM05D002683 ORTHO05D007757 1.1e-30 136.7 88 72.7
Sabra13G0006000 Salix brachista HOM05D002683 ORTHO05D007757 1.1e-30 136.7 83 80.7
HanXRQChr04g0110421 Helianthus annuus HOM05D002683 ORTHO05D007757 1.4e-30 136.3 88 72.7
Sc16g0009160 Simmondsia chinensis HOM05D002683 ORTHO05D007757 1.4e-30 136.3 85 76.5
Eucgr.B01688 Eucalyptus grandis HOM05D002683 ORTHO05D007757 1.8e-30 136.0 87 72.4
Eucgr.L00254 Eucalyptus grandis HOM05D002683 ORTHO05D007757 1.8e-30 136.0 87 72.4
VMungo0720G2268 Vigna mungo HOM05D002683 ORTHO05D007757 1.8e-30 136.0 88 73.9
Cfa006719 Carpinus fangiana HOM05D002683 ORTHO05D007541 2.4e-30 135.6 88 75.0
Haze_04041 Corylus avellana HOM05D002683 ORTHO05D007541 2.4e-30 135.6 88 75.0
Glyma.10G146000 Glycine max HOM05D002683 ORTHO05D007757 2.4e-30 135.6 88 73.9
Lalb_Chr06g0167431 Lupinus albus HOM05D002683 ORTHO05D007757 2.4e-30 135.6 88 75.0
Nitab4.5_0003838g0050 Nicotiana tabacum HOM05D002683 ORTHO05D007757 2.4e-30 135.6 89 71.9
Cpa.g.sc48.179 Carica papaya HOM05D002683 ORTHO05D007757 3.1e-30 135.2 88 73.9
GSVIVG01031262001 Vitis vinifera HOM05D002683 ORTHO05D007757 3.1e-30 135.2 88 71.6
Glyma.20G095700 Glycine max HOM05D002683 ORTHO05D007757 4.1e-30 134.8 88 73.9
arahy.Tifrunner.gnm1.ann1.941PVT Arachis hypogaea HOM05D002683 ORTHO05D007757 6.9e-30 134.0 86 74.4
ClCG02G014790 Citrullus lanatus HOM05D002683 ORTHO05D007757 6.9e-30 134.0 86 74.4
arahy.Tifrunner.gnm1.ann1.K5JNPB Arachis hypogaea HOM05D002683 ORTHO05D007757 9.1e-30 133.7 88 75.0
MELO3C004172.2 Cucumis melo HOM05D002683 ORTHO05D007757 9.1e-30 133.7 86 74.4
FvH4_6g07800 Fragaria vesca HOM05D002683 ORTHO05D007757 9.1e-30 133.7 87 72.4
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.1e-30 133.7 87 72.4
FAN05G3891 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.1e-30 133.7 87 72.4
FAN09G2929 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.1e-30 133.7 87 72.4
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.1e-30 133.7 87 72.4
TWI56G0626 Tripterygium wilfordii HOM05D002683 ORTHO05D007757 9.1e-30 133.7 83 78.3
AUR62006768 Chenopodium quinoa HOM05D002683 ORTHO05D007757 1.2e-29 133.3 81 76.5
DCAR_005279 Daucus carota HOM05D002683 ORTHO05D007757 1.2e-29 133.3 87 72.4
Gohir.D13G115900 Gossypium hirsutum HOM05D002683 ORTHO05D007757 1.2e-29 133.3 88 73.9
Nitab4.5_0003044g0120 Nicotiana tabacum HOM05D002683 ORTHO05D007757 1.2e-29 133.3 89 70.8
Phvul.007G202700 Phaseolus vulgaris HOM05D002683 ORTHO05D007757 1.2e-29 133.3 83 75.9
Duzib128G0271 Durio zibethinus HOM05D002683 ORTHO05D007757 1.5e-29 132.9 83 77.1
Peaxi162Scf00357g00733 Petunia axillaris HOM05D002683 ORTHO05D007757 2.0e-29 132.5 89 71.9
Psat6g153200 Pisum sativum HOM05D002683 ORTHO05D007757 2.0e-29 132.5 88 72.7
PGR083G0299 Punica granatum HOM05D002683 ORTHO05D007757 2.0e-29 132.5 86 74.4
Cc02_g35260 Coffea canephora HOM05D002683 ORTHO05D007757 2.6e-29 132.1 88 75.0
CsaV3_2G007210 Cucumis sativus L. HOM05D002683 ORTHO05D007757 2.6e-29 132.1 86 72.1
MBI19_g03278_MAGBIO Magnolia biondii HOM05D002683 ORTHO05D007757 2.6e-29 132.1 89 73.0
QL03p016219 Quercus lobata HOM05D002683 ORTHO05D007757 2.6e-29 132.1 83 78.3
Thecc.05G325200 Theobroma cacao HOM05D002683 ORTHO05D007757 2.6e-29 132.1 83 78.3
Atru.BG.140.p Acer truncatum HOM05D002683 ORTHO05D007757 3.4e-29 131.7 88 72.7
Aqoxy2G02654 Aquilegia oxysepala HOM05D002683 ORTHO05D007757 3.4e-29 131.7 88 75.0
Gorai.013G130400 Gossypium raimondii HOM05D002683 ORTHO05D007757 3.4e-29 131.7 88 72.7
PSO210G3019 Papaver somniferum HOM05D002683 ORTHO05D007757 4.5e-29 131.3 87 70.1
PSO761G0375 Papaver somniferum HOM05D002683 ORTHO05D007757 4.5e-29 131.3 87 70.1
AUR62000422 Chenopodium quinoa HOM05D002683 ORTHO05D007757 5.9e-29 131.0 81 75.3
QL03p016490 Quercus lobata HOM05D002683 ORTHO05D007757 5.9e-29 131.0 81 79.0
Ah.06g196180 Amaranthus hybridus HOM05D002683 ORTHO05D007757 1.0e-28 130.2 81 71.6
Migut.B00939 Erythranthe guttata HOM05D002683 ORTHO05D007757 1.0e-28 130.2 88 71.6
RcHm_v2.0_Chr3g0457511 Rosa chinensis HOM05D002683 ORTHO05D007757 1.3e-28 129.8 83 74.7
Hund07304 Selenicereus undatus HOM05D002683 ORTHO05D007757 1.7e-28 129.4 85 74.1
Nn3g21801 Nelumbo nucifera HOM05D002683 ORTHO05D007757 2.2e-28 129.0 83 74.7
Sed0002163 Sechium edule HOM05D002683 ORTHO05D007757 2.2e-28 129.0 88 67.0
unitig_899.g14747 Utricularia gibba HOM05D002683 ORTHO05D007757 2.2e-28 129.0 91 65.9
Sopen01g044240 Solanum pennellii HOM05D002683 ORTHO05D007757 3.8e-28 128.3 83 73.5
PGSC0003DMG400002792 Solanum tuberosum HOM05D002683 ORTHO05D007757 3.8e-28 128.3 83 73.5
Gohir.A13G112900 Gossypium hirsutum HOM05D002683 ORTHO05D007757 5.0e-28 127.9 88 70.5
SGA_v2.0_scaffold4G01974 Striga asiatica HOM05D002683 ORTHO05D007757 6.5e-28 127.5 88 67.0
Prupe.6G310400 Prunus persica HOM05D002683 ORTHO05D007757 8.5e-28 127.1 83 73.5
SalBow7G3902 Salvia bowleyana HOM05D002683 ORTHO05D007757 8.5e-28 127.1 89 68.5
Solyc01g100740.4 Solanum lycopersicum HOM05D002683 ORTHO05D007757 8.5e-28 127.1 81 74.1
CAN.G1076.36 Capsicum annuum HOM05D002683 ORTHO05D007757 1.9e-27 125.9 83 71.1
Ciclev10000978m.g Citrus clementina HOM05D002683 ORTHO05D007757 3.2e-27 125.2 83 72.3
Sed0019928 Sechium edule HOM05D002683 ORTHO05D007757 7.2e-27 124.0 81 72.8
AT1G09300 Arabidopsis thaliana HOM05D002683 ORTHO05D007757 9.4e-27 123.6 89 66.3
EL10Ac4g09493 Beta vulgaris HOM05D002683 ORTHO05D007757 9.4e-27 123.6 76 75.0
THA.LOC104820580 Tarenaya hassleriana HOM05D002683 ORTHO05D007757 2.1e-26 122.5 85 68.2
Thhalv10007508m.g Eutrema salsugineum HOM05D002683 ORTHO05D007757 2.7e-26 122.1 84 70.2
MSTRG.20371 Avicennia marina HOM05D002683 ORTHO05D007757 3.6e-26 121.7 83 67.5
AL1G19790 Arabidopsis lyrata HOM05D002683 ORTHO05D007757 6.1e-26 120.9 85 67.1
Carub.0001s0864 Capsella rubella HOM05D002683 ORTHO05D007757 6.1e-26 120.9 84 67.9
CARHR009270 Cardamine hirsuta HOM05D002683 ORTHO05D007757 6.1e-26 120.9 85 67.1
unitig_42.g32306 Utricularia gibba HOM05D002683 ORTHO05D007757 1.0e-25 120.2 82 68.3
BraA08t35381Z Brassica rapa HOM05D002683 ORTHO05D007757 1.4e-25 119.8 86 65.1
BcaB03g13283 Brassica carinata HOM05D002683 ORTHO05D007757 1.8e-25 119.4 84 67.9
A08p34690 Brassica napus HOM05D002683 ORTHO05D007757 3.9e-25 118.2 86 64.0
ATR0693G361 Amborella trichopoda HOM05D002683 ORTHO05D007757 5.2e-25 117.9 83 67.5
BcaC07g38490 Brassica carinata HOM05D002683 ORTHO05D007757 5.2e-25 117.9 84 65.5
C08p12600 Brassica napus HOM05D002683 ORTHO05D007757 5.2e-25 117.9 84 65.5
BolC8t48898H Brassica oleracea HOM05D002683 ORTHO05D007757 5.2e-25 117.9 84 65.5
Aa31LG1G5830 Aethionema arabicum HOM05D002683 ORTHO05D007757 8.8e-25 117.1 84 66.7
Sp1g07910 Schrenkiella parvula HOM05D002683 ORTHO05D007757 2.6e-24 115.5 84 64.3
SEGI_11666 Sequoiadendron giganteum HOM05D002683 ORTHO05D007757 3.3e-24 115.2 79 67.1
HPP92_010879 Vanilla planifolia HOM05D002683 ORTHO05D007757 3.3e-24 115.2 81 65.4
Os12g0563500 Oryza sativa ssp. japonica HOM05D002683 ORTHO05D007757 4.8e-23 111.3 93 59.1
Zm00001eb028570 Zea mays HOM05D002683 ORTHO05D007757 2.4e-22 109.0 81 65.4
Ca_10183_v3 Cicer arietinum L. HOM05D002683 ORTHO05D007757 2.6e-21 105.5 65 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3324 Anthoceros agrestis HOM05D002683 ORTHO05D007757 7.2e-19 97.4 89 53.9
SMO119G0363 Selaginella moellendorffii HOM05D002683 ORTHO05D007757 5.2e-17 91.3 87 48.3
Mapoly0027s0075 Marchantia polymorpha HOM05D002683 ORTHO05D007757 1.5e-16 89.7 87 49.4
Lj5A325T77 Lonicera japonica HOM05D002683 ORTHO05D007757 2.6e-16 89.0 88 53.4
Pp3c12_9660 Physcomitrium patens HOM05D002683 ORTHO05D007757 2.8e-15 85.5 89 48.3
Duzib177G1111 Durio zibethinus HOM05D002683 ORTHO05D007757 5.3e-14 81.3 52 78.8
Cre01.g046150 Chlamydomonas reinhardtii HOM05D002683 ORTHO05D007757 9.8e-08 60.5 63 41.3
Atru.chr2.247 Acer truncatum HOM05D002683 ORTHO05D007541 1.8e-06 56.2 39 71.8


User provided reference genes

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