Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.6e-249 864.4 414 100.0
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.5e-228 794.7 395 95.4
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.6e-172 608.6 336 88.4
Rhsim07G0232100 Rhododendron simsii HOM05D010628 ORTHO05D010877 8.8e-147 524.2 352 73.9
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.4e-146 521.9 356 73.3
RhsimUnG0034600 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.0e-144 514.6 352 72.4
RhsimUnG0034700 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.0e-144 514.6 352 72.4
RhsimUnG0034800 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.0e-144 514.6 352 72.4
RhsimUnG0034900 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.7e-142 510.0 352 71.9
RhsimUnG0034500 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.8e-142 508.8 352 71.6
RhsimUnG0034400 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.8e-100 369.8 352 57.1
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.1e-45 188.3 357 37.3
Rhsim05G0082300 Rhododendron simsii HOM05D000130 ORTHO05D000257 5.7e-45 186.0 94 93.6
Rhsim09G0205400 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.4e-35 154.1 172 49.4
RhsimUnG0033700 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.9e-33 147.1 298 36.2
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 2.3e-22 110.9 265 32.1
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 4.0e-22 110.2 308 29.9
Rhsim03G0011900 Rhododendron simsii HOM05D018081 ORTHO05D010877 5.2e-22 109.8 342 29.2
Rhsim12G0158900 Rhododendron simsii HOM05D000374 ORTHO05D000238 1.7e-20 104.8 275 31.6
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 2.4e-19 100.9 315 30.5
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 2.4e-19 100.9 315 30.5
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 4.1e-19 100.1 201 33.3
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 7.0e-19 99.4 364 29.7
Rhsim10G0137100 Rhododendron simsii HOM05D000374 ORTHO05D013046 2.7e-18 97.4 283 31.4
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 5.9e-18 96.3 352 30.1
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 7.8e-18 95.9 275 29.5
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 1.0e-17 95.5 335 27.8
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 2.3e-17 94.4 308 31.2
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 8.6e-17 92.4 273 27.8
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.3e-16 90.5 311 30.2
Thhalv10012107m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.3e-16 90.1 282 30.5
QL02p072942 Quercus lobata HOM05D025100 ORTHO05D010877 9.5e-16 89.0 299 27.4
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.2e-15 88.6 316 25.9
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 2.1e-15 87.8 289 29.8
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.1e-15 87.8 318 27.4
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 4.7e-15 86.7 207 31.4
Rhsim03G0231000 Rhododendron simsii HOM05D018081 ORTHO05D026100 1.8e-14 84.7 357 26.9
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 3.0e-14 84.0 134 36.6
Lj3P635T20 Lonicera japonica HOM05D053282 ORTHO05D010877 3.0e-14 84.0 255 27.1
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 4.0e-14 83.6 300 25.3
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 4.4e-13 80.1 275 26.2
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 4.4e-13 80.1 320 25.6
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.7e-13 79.7 300 25.3
AT4G39590 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.3e-12 78.6 194 29.4
A06p13420 Brassica napus HOM05D000249 ORTHO05D000206 2.9e-12 77.4 136 32.4
BraA06t24494Z Brassica rapa HOM05D000249 ORTHO05D000206 2.9e-12 77.4 136 33.1
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 6.4e-12 76.3 230 29.6
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.1e-11 75.5 220 30.0
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.1e-11 75.5 312 25.6
A06p43040 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-11 75.1 136 32.4
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 1.4e-11 75.1 215 30.7
AL7G11720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.8e-11 74.7 194 29.9
Carub.0008s0881 Capsella rubella HOM05D000249 ORTHO05D000206 3.2e-11 73.9 174 31.6
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 5.4e-11 73.2 229 29.3
BcaNung05813 Brassica carinata HOM05D000249 ORTHO05D000206 7.0e-11 72.8 267 26.2
Carub.0002s2327 Capsella rubella HOM05D000249 ORTHO05D000206 9.2e-11 72.4 156 35.3
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 9.2e-11 72.4 162 29.6
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.2e-10 72.0 232 28.4
CARHR175770 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.0e-10 71.2 158 31.0
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.0e-10 71.2 295 26.1
Thhalv10005584m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.7e-10 70.9 118 33.1
Aqoxy2G00744 Aquilegia oxysepala HOM05D002402 ORTHO05D002633 3.5e-10 70.5 192 27.1
Rhsim12G0051600 Rhododendron simsii HOM05D010628 ORTHO05D016249 5.9e-10 69.7 331 23.3
Carub.0007s0183 Capsella rubella HOM05D000249 ORTHO05D000206 7.8e-10 69.3 153 30.1
Thhalv10005635m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 7.8e-10 69.3 150 34.0
Rhsim04G0208100 Rhododendron simsii HOM05D013111 ORTHO05D013046 7.8e-10 69.3 306 26.5
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-09 68.6 159 30.8
Gorai.010G041700 Gossypium raimondii HOM05D009781 ORTHO05D011819 1.7e-09 68.2 204 28.4
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 2.3e-09 67.8 220 26.4
A01p00440 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-09 67.8 267 25.5
BraA01t00051Z Brassica rapa HOM05D000249 ORTHO05D000206 2.3e-09 67.8 267 25.5
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 2.3e-09 67.8 278 25.9
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 3.0e-09 67.4 297 24.6
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 3.0e-09 67.4 197 27.4
Carub.0008s0622 Capsella rubella HOM05D000249 ORTHO05D000206 6.6e-09 66.2 116 38.8
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 6.6e-09 66.2 113 37.2
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 6.6e-09 66.2 197 27.4
QL11p003115 Quercus lobata HOM05D010066 ORTHO05D009743 6.6e-09 66.2 228 25.9
AL7G11700 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.6e-09 65.9 178 29.8
Carub.0004s1066 Capsella rubella HOM05D000249 ORTHO05D000206 8.6e-09 65.9 148 30.4
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 8.6e-09 65.9 126 36.5
Sp7g31430 Schrenkiella parvula HOM05D000249 ORTHO05D000206 8.6e-09 65.9 123 37.4
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 1.1e-08 65.5 169 26.6
QL11p055815 Quercus lobata HOM05D025344 ORTHO05D021181 1.1e-08 65.5 293 23.2
AL1G52780 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.5e-08 65.1 165 30.3
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.5e-08 65.1 152 31.6
A06p48420 Brassica napus HOM05D000249 ORTHO05D000206 1.5e-08 65.1 152 30.9
BraA06t27710Z Brassica rapa HOM05D000249 ORTHO05D000206 1.5e-08 65.1 152 30.9
QL11p045102 Quercus lobata HOM05D010066 ORTHO05D009743 1.5e-08 65.1 156 26.9
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 1.5e-08 65.1 283 25.4
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 1.5e-08 65.1 283 25.4
C01p10140 Brassica napus HOM05D000249 ORTHO05D000206 1.9e-08 64.7 162 29.6
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 1.9e-08 64.7 111 38.7
C03p37710 Brassica napus HOM05D000249 ORTHO05D000206 2.5e-08 64.3 175 27.4
BolC3t16060H Brassica oleracea HOM05D000249 ORTHO05D000206 2.5e-08 64.3 175 27.4
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 2.5e-08 64.3 162 30.2
CARHR246950 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.5e-08 64.3 99 35.4
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 2.5e-08 64.3 161 28.6
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 3.3e-08 63.9 177 30.5
AT4G19330 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.3e-08 63.5 159 27.7
BolC1t00971H Brassica oleracea HOM05D000249 ORTHO05D000206 4.3e-08 63.5 162 29.6
THA.LOC104807690 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 4.3e-08 63.5 185 26.5
AT4G19250 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 7.3e-08 62.8 135 30.4
BcaC09g51721 Brassica carinata HOM05D000249 ORTHO05D000206 7.3e-08 62.8 162 29.0
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 7.3e-08 62.8 158 26.6
AL7G11600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.5e-08 62.4 164 29.9
AT4G39570 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 9.5e-08 62.4 170 30.6
arahy.Tifrunner.gnm1.ann1.00W0BQ Arachis hypogaea HOM05D008504 ORTHO05D010707 9.5e-08 62.4 191 26.7
arahy.Tifrunner.gnm1.ann1.DST42P Arachis hypogaea HOM05D008504 ORTHO05D010707 9.5e-08 62.4 191 26.7
arahy.Tifrunner.gnm1.ann1.MCNZ84 Arachis hypogaea HOM05D008504 ORTHO05D010707 9.5e-08 62.4 191 26.7
A01p00990 Brassica napus HOM05D000249 ORTHO05D024028 9.5e-08 62.4 162 31.5
BraA01t00097Z Brassica rapa HOM05D000249 ORTHO05D024028 9.5e-08 62.4 162 31.5
BcaNung05801 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-07 62.0 163 28.2
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-07 62.0 128 31.2
CARHR246590 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.2e-07 62.0 228 26.8
QL11p042411 Quercus lobata HOM05D025344 ORTHO05D009743 1.2e-07 62.0 318 24.2
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 1.2e-07 62.0 122 32.0
Sp7g36900 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.2e-07 62.0 207 27.1
A04p08940 Brassica napus HOM05D000249 ORTHO05D000206 1.6e-07 61.6 113 33.6
BraA04t16590Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-07 61.6 113 33.6
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.1e-07 61.2 164 33.5
BcaB01g02478 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-07 61.2 125 32.0
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-07 61.2 139 31.7
Carub.0007s3640 Capsella rubella HOM05D000249 ORTHO05D000206 2.1e-07 61.2 141 29.1
AL34U10130 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.8e-07 60.8 128 32.0
Carub.0008s0634 Capsella rubella HOM05D000249 ORTHO05D000206 2.8e-07 60.8 145 31.0
Gohir.A11G053500 Gossypium hirsutum HOM05D000249 ORTHO05D000206 2.8e-07 60.8 197 26.4
QL11p036388 Quercus lobata HOM05D010066 ORTHO05D009743 2.8e-07 60.8 226 25.7
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 3.6e-07 60.5 140 27.9
COL.COLO4_31615 Corchorus olitorius HOM05D052704 ORTHO05D044704 3.6e-07 60.5 118 31.4
Duzib264G0588 Durio zibethinus HOM05D000249 ORTHO05D000206 3.6e-07 60.5 103 33.0
BcaB06g26248 Brassica carinata HOM05D000249 ORTHO05D000206 4.7e-07 60.1 173 27.7
Haze_25043 Corylus avellana HOM05D000249 ORTHO05D000206 4.7e-07 60.1 167 27.5
QL11p036944 Quercus lobata HOM05D010066 ORTHO05D009743 4.7e-07 60.1 179 28.5
Thhalv10009657m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.2e-07 59.7 173 31.2
Sp6g05050 Schrenkiella parvula HOM05D000249 ORTHO05D016802 6.2e-07 59.7 157 32.5
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 8.0e-07 59.3 176 29.0
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 8.0e-07 59.3 176 29.0
C04p42830 Brassica napus HOM05D000249 ORTHO05D000206 8.0e-07 59.3 113 32.7
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 8.0e-07 59.3 176 29.0
BolC4t25849H Brassica oleracea HOM05D000249 ORTHO05D000206 8.0e-07 59.3 113 32.7
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 8.0e-07 59.3 117 32.5
Thhalv10025580m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 8.0e-07 59.3 157 31.2
CARHR200550 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.1e-06 58.9 116 31.9
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 1.1e-06 58.9 100 39.0
Thhalv10006011m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.4e-06 58.5 148 29.1
arahy.Tifrunner.gnm1.ann1.B27QWS Arachis hypogaea HOM05D008504 ORTHO05D010707 1.8e-06 58.2 156 27.6
A01p00460 Brassica napus HOM05D000249 ORTHO05D000206 1.8e-06 58.2 158 25.9
BraA01t00053Z Brassica rapa HOM05D000249 ORTHO05D000206 1.8e-06 58.2 158 25.9
DCAR_018731 Daucus carota HOM05D029922 ORTHO05D013046 1.8e-06 58.2 148 27.0
QL11p042465 Quercus lobata HOM05D025344 ORTHO05D009743 1.8e-06 58.2 120 34.2
AL7G12790 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-06 57.8 126 31.7
BolC4t26700H Brassica oleracea HOM05D000249 ORTHO05D000206 2.3e-06 57.8 117 31.6
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-06 57.8 144 31.2
Thhalv10025324m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-06 57.8 134 32.1
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 2.3e-06 57.8 106 34.9
HPP92_008505 Vanilla planifolia HOM05D000667 ORTHO05D009057 2.3e-06 57.8 190 26.8
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 4.0e-06 57.0 115 32.2
A09p21200 Brassica napus HOM05D000249 ORTHO05D000206 5.2e-06 56.6 109 32.1
C07p01540 Brassica napus HOM05D000249 ORTHO05D000206 5.2e-06 56.6 99 31.3
C07p63080 Brassica napus HOM05D000249 ORTHO05D000206 5.2e-06 56.6 135 30.4
BraA03t15259Z Brassica rapa HOM05D000249 ORTHO05D032890 5.2e-06 56.6 158 29.1
BraA09t37726Z Brassica rapa HOM05D000249 ORTHO05D000206 5.2e-06 56.6 109 32.1
C04p51070 Brassica napus HOM05D000249 ORTHO05D000206 6.8e-06 56.2 117 30.8
AL8G22350 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.9e-06 55.8 117 32.5
A08p30690 Brassica napus HOM05D000249 ORTHO05D000206 8.9e-06 55.8 164 29.9
Carub.0007s0348 Capsella rubella HOM05D000249 ORTHO05D000206 8.9e-06 55.8 96 29.2
Carub.0011s0005 Capsella rubella HOM05D000249 ORTHO05D000206 8.9e-06 55.8 99 34.3


User provided reference genes

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