Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.6e-147 525.4 268 100.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.4e-99 365.5 266 74.8
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 5.4e-97 358.2 266 73.3
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.5e-96 355.5 266 71.8
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 3.0e-95 352.4 266 71.8
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 6.6e-95 351.3 266 71.4
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 8.1e-93 344.4 266 71.1
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 4.0e-92 342.0 261 69.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 5.3e-92 341.7 264 68.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.0e-91 339.7 263 68.4
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.0e-91 339.7 266 69.2
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.4e-91 339.0 264 68.9
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 5.8e-91 338.2 266 68.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.7e-90 336.7 263 67.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.8e-90 335.5 262 69.1
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.8e-90 335.5 261 69.0
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 8.4e-90 334.3 263 67.3
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.1e-89 334.0 267 65.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.4e-89 332.8 266 68.4
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.4e-89 332.8 266 67.3
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.4e-89 332.8 266 67.3
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.4e-89 332.8 263 66.5
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.7e-88 329.3 269 65.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.6e-88 328.6 263 64.3
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.7e-87 326.6 266 66.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.6e-87 324.7 261 68.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 6.6e-87 324.7 261 66.7
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.5e-86 323.6 264 67.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.5e-86 323.6 262 66.4
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.5e-86 323.6 264 65.9
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.3e-86 322.0 264 67.4
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.6e-86 321.6 264 65.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.3e-86 321.2 265 65.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.1e-85 319.7 262 64.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.1e-85 319.7 264 65.5
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.1e-85 319.7 264 65.5
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.8e-85 319.3 269 63.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.6e-85 318.9 266 63.2
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.6e-85 318.9 260 64.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 4.8e-85 318.5 262 66.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 4.8e-85 318.5 264 64.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 8.1e-85 317.8 270 64.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.8e-84 316.6 265 63.8
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-84 316.2 264 62.1
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.0e-84 315.5 265 66.4
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 9.0e-84 314.3 262 64.5
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.2e-83 313.9 336 55.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.0e-83 313.2 267 62.9
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 2.6e-83 312.8 260 62.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.6e-83 312.8 269 62.8
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.4e-83 312.4 260 62.7
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 5.8e-83 311.6 262 63.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 9.9e-83 310.8 262 61.5
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.7e-82 310.1 260 62.3
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.8e-82 308.9 267 61.8
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.9e-81 306.6 307 57.3
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.4e-81 306.2 265 62.6
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 5.4e-81 305.1 264 62.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.1e-81 304.7 260 61.2
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.5e-80 302.4 233 72.1
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.6e-80 302.0 262 59.9
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 6.0e-80 301.6 260 60.8
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.0e-80 301.6 262 60.7
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 7.9e-80 301.2 264 63.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.0e-79 300.8 260 60.4
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.0e-79 300.8 260 61.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.0e-79 300.8 260 61.2
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.0e-79 300.8 260 60.4
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.3e-79 300.4 247 64.8
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.0e-79 299.3 263 62.0
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 5.1e-79 298.5 260 60.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.7e-79 298.1 256 64.1
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.1e-78 297.4 264 61.0
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.6e-78 295.0 231 68.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.3e-77 293.9 300 55.7
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.3e-77 293.9 265 63.0
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.1e-77 293.1 230 68.3
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.1e-76 289.3 266 59.8
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.6e-75 286.2 231 67.1
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.8e-75 285.0 260 57.7
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 9.9e-75 284.3 261 62.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.9e-74 282.0 253 60.1
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 6.4e-74 281.6 264 56.1
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 8.4e-74 281.2 243 63.4
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.4e-73 280.4 238 61.8
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.9e-73 280.0 235 63.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-71 274.2 261 55.9
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.0e-71 274.2 231 62.8
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.8e-71 273.5 228 64.9
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.0e-71 272.7 263 55.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.9e-71 272.3 261 55.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.9e-70 270.0 264 54.5
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.5e-70 269.6 258 59.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.5e-70 269.6 258 59.3
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.3e-70 269.2 255 58.8
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.6e-70 268.5 240 63.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.8e-69 266.2 248 59.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.5e-67 260.4 262 51.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 5.5e-65 251.9 262 51.9
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 5.5e-65 251.9 216 60.2
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 7.1e-65 251.5 262 51.5
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 7.1e-65 251.5 262 51.5
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 9.3e-65 251.1 262 51.9
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.2e-64 250.8 262 51.1
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.2e-64 250.8 254 49.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-64 250.4 262 51.1
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 3.5e-64 249.2 195 69.7
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.3e-62 242.7 245 57.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 7.4e-62 241.5 228 56.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 4.8e-61 238.8 218 62.4
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.3e-61 238.4 223 59.6
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 8.2e-61 238.0 252 48.4
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.4e-60 237.3 212 60.4
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.3e-60 235.3 194 64.4
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 9.0e-60 234.6 257 49.0
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.2e-58 229.9 263 47.9
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 5.5e-57 225.3 182 68.1
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 7.2e-57 224.9 246 51.2
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.9e-55 219.2 272 50.7
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 6.7e-55 218.4 253 49.0
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 4.3e-54 215.7 194 60.8
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.7e-54 215.3 266 43.6
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.2e-53 211.5 231 53.7
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.0e-51 206.8 176 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 4.1e-44 182.6 194 51.0
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.5e-43 180.6 102 88.2
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.5e-43 179.5 264 43.9
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 4.5e-43 179.1 106 83.0
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 5.0e-42 175.6 264 41.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 6.1e-40 168.7 103 78.6
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-39 167.9 101 79.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.7e-37 159.5 100 79.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.1e-36 157.9 103 76.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.2e-35 154.5 100 75.0
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.5e-33 147.5 268 40.3
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.2e-29 133.7 76 77.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.8e-28 130.6 82 78.0
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 7.0e-28 128.6 234 35.0
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.7e-24 116.7 113 50.4
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.8e-23 114.0 129 51.9
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.8e-21 106.7 239 31.8
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.6e-19 100.9 125 48.8
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 4.5e-19 99.4 241 31.5
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 4.5e-19 99.4 241 31.5
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-18 97.1 69 73.9
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.6e-16 90.9 51 86.3
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-16 90.5 55 78.2
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.2e-14 84.7 49 81.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 6.3e-13 79.0 70 58.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.4e-12 75.9 89 43.8
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.0e-11 73.9 225 26.7
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 5.9e-11 72.4 48 68.8
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.0e-10 71.6 54 59.3
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 8.6e-10 68.6 50 62.0
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 9.5e-09 65.1 57 63.2
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.7e-08 62.8 48 54.2
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 6.8e-07 58.9 72 50.0


User provided reference genes

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