Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.0e-81 304.3 173 100.0
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.0e-27 127.5 137 56.2
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 5.7e-23 111.7 137 51.8
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-21 106.7 134 51.5
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 9.1e-21 104.4 144 48.6
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.6e-20 102.8 136 47.8
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 7.7e-20 101.3 138 47.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.3e-19 100.5 175 42.9
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-19 100.1 134 41.8
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.5e-18 97.1 134 50.7
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.5e-18 95.1 135 43.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 4.7e-17 92.0 137 43.1
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 4.7e-17 92.0 69 69.6
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 4.7e-17 92.0 130 43.8
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 8.0e-17 91.3 134 48.5
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.0e-17 91.3 136 41.2
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.0e-16 90.9 149 43.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.0e-16 90.9 128 43.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.4e-16 90.5 131 43.5
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.0e-16 89.4 126 44.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.0e-16 89.4 131 41.2
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.0e-16 89.0 70 61.4
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.0e-16 89.0 136 42.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 8.8e-16 87.8 60 68.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.8e-16 87.8 59 67.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.8e-16 87.8 59 67.8
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.0e-15 86.7 69 69.6
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.4e-15 85.9 132 40.9
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 5.7e-15 85.1 132 43.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 7.5e-15 84.7 58 69.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 7.5e-15 84.7 69 63.8
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.8e-15 84.3 131 41.2
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 9.8e-15 84.3 131 41.2
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-14 84.0 68 63.2
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-14 84.0 68 63.2
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.3e-14 84.0 71 60.6
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-14 83.6 68 63.2
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.2e-14 83.2 128 41.4
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.7e-14 82.4 68 63.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 6.3e-14 81.6 136 38.2
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.3e-14 81.6 145 40.0
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 8.3e-14 81.3 55 69.1
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.1e-13 80.9 58 65.5
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-13 80.9 63 63.5
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.8e-13 80.1 47 78.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-13 79.7 131 39.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.4e-13 79.7 63 65.1
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.1e-13 79.3 135 37.8
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.4e-13 78.6 67 56.7
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 7.0e-13 78.2 59 64.4
Actinidia08253 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.1e-13 77.8 98 52.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 9.1e-13 77.8 138 39.1
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.6e-12 77.0 59 62.7
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.6e-12 77.0 47 78.7
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-12 76.6 69 55.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.0e-12 76.6 59 61.0
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 2.0e-12 76.6 131 38.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 3.5e-12 75.9 72 58.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.5e-12 75.9 53 67.9
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.5e-12 75.5 55 67.3
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 5.9e-12 75.1 63 57.1
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 5.9e-12 75.1 68 54.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 7.7e-12 74.7 63 57.1
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.0e-11 74.3 128 39.1
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.0e-11 74.3 40 80.0
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.3e-11 73.9 65 61.5
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.7e-11 73.6 69 55.1
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.9e-11 72.8 67 53.7
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.8e-11 72.4 57 66.7
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.0e-11 72.0 57 59.6
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 8.5e-11 71.2 65 58.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 8.5e-11 71.2 53 66.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 8.5e-11 71.2 71 50.7
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.9e-10 70.1 56 55.4
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 2.5e-10 69.7 54 61.1
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.5e-10 69.7 71 54.9
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.5e-10 69.7 66 56.1
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 4.2e-10 68.9 64 53.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 4.2e-10 68.9 47 66.0
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.2e-10 68.9 47 66.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.2e-10 68.9 47 66.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 4.2e-10 68.9 60 61.7
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 7.2e-10 68.2 138 40.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 9.4e-10 67.8 69 52.2
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 9.4e-10 67.8 62 53.2
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 9.4e-10 67.8 46 69.6
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 9.4e-10 67.8 56 55.4
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 9.4e-10 67.8 104 37.5
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.2e-09 67.4 64 56.2
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-09 67.4 55 54.5
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.7e-09 66.2 44 63.6
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.7e-09 66.2 57 54.4
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.7e-09 66.2 68 50.0
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.7e-09 66.2 58 55.2
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 2.7e-09 66.2 45 64.4
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.7e-09 66.2 136 35.3
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.7e-09 65.5 47 63.8
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 4.7e-09 65.5 59 59.3
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.7e-09 65.5 130 36.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 4.7e-09 65.5 40 72.5
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.1e-09 65.1 47 66.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 6.1e-09 65.1 66 50.0
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.0e-09 64.7 47 61.7
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 8.0e-09 64.7 138 38.4
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.0e-09 64.7 45 68.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 8.0e-09 64.7 55 56.4
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.4e-08 63.9 62 56.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.4e-08 63.9 61 50.8
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.8e-08 63.5 72 45.8
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.8e-08 63.5 141 36.9
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.3e-08 63.2 136 35.3
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.3e-08 63.2 62 50.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 3.0e-08 62.8 49 63.3
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 4.0e-08 62.4 119 38.7
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 5.2e-08 62.0 63 49.2
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 5.2e-08 62.0 128 35.9
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 6.8e-08 61.6 50 60.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 8.8e-08 61.2 52 57.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.2e-07 60.8 141 36.2
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.2e-07 60.8 64 53.1
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.2e-07 60.8 54 50.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.5e-07 60.5 72 44.4
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 1.5e-07 60.5 132 36.4
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 2.0e-07 60.1 46 60.9
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 2.0e-07 60.1 57 54.4
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.4e-07 59.3 67 50.7
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 3.4e-07 59.3 181 32.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.4e-07 58.9 49 59.2
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 4.4e-07 58.9 58 53.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 5.7e-07 58.5 133 33.1
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.3e-06 57.4 54 48.1
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.2e-06 56.6 56 50.0
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 2.8e-06 56.2 78 44.9
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 2.8e-06 56.2 64 48.4
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 4.9e-06 55.5 45 57.8
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 4.9e-06 55.5 45 57.8
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 6.3e-06 55.1 48 58.3
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 8.3e-06 54.7 49 57.1
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 8.3e-06 54.7 48 56.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 8.3e-06 54.7 48 56.2


User provided reference genes

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