Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0217900 Rhododendron simsii HOM05D000010 ORTHO05D000151 2.5e-69 265.4 138 100.0
Rhsim07G0217800 Rhododendron simsii HOM05D000010 ORTHO05D000151 4.9e-25 118.2 57 91.2
Rhsim07G0218100 Rhododendron simsii HOM05D000010 ORTHO05D000151 5.9e-23 111.3 54 90.7
Rhsim13G0110300 Rhododendron simsii HOM05D000010 ORTHO05D000151 3.7e-17 92.0 63 65.1
Rhsim13G0220100 Rhododendron simsii HOM05D000010 ORTHO05D000151 1.1e-16 90.5 56 67.9
vmacro04147 Vaccinium macrocarpon HOM05D000010 ORTHO05D000151 5.4e-16 88.2 53 64.2
Actinidia06917 Actinidia chinensis HOM05D000010 ORTHO05D000151 2.3e-14 82.8 55 63.6
CSS0009509 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 4.0e-11 72.0 47 66.0
CSS0022840 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 4.0e-11 72.0 47 66.0
Peaxi162Scf00004g02727 Petunia axillaris HOM05D000010 ORTHO05D000151 4.0e-11 72.0 41 70.7
Actinidia06916 Actinidia chinensis HOM05D000010 ORTHO05D000151 5.2e-11 71.6 51 60.8
CAN.G384.5 Capsicum annuum HOM05D000010 ORTHO05D000151 8.9e-11 70.9 43 69.8
CSS0021788 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 1.2e-10 70.5 62 53.2
Peaxi162Scf00086g00028 Petunia axillaris HOM05D000010 ORTHO05D000151 7.5e-10 67.8 55 54.5
Nitab4.5_0004741g0060 Nicotiana tabacum HOM05D000010 ORTHO05D000151 9.8e-10 67.4 43 65.1
Duzib168G1194 Durio zibethinus HOM05D000010 ORTHO05D000151 1.3e-09 67.0 43 62.8
QL02p054893 Quercus lobata HOM05D000010 ORTHO05D023096 1.3e-09 67.0 48 54.2
QL02p054937 Quercus lobata HOM05D000010 ORTHO05D000151 1.3e-09 67.0 50 56.0
QL02p054807 Quercus lobata HOM05D000010 ORTHO05D000151 1.7e-09 66.6 48 58.3
Solyc11g065540.1 Solanum lycopersicum HOM05D000010 ORTHO05D000151 1.7e-09 66.6 49 59.2
Nitab4.5_0002741g0050 Nicotiana tabacum HOM05D000010 ORTHO05D000151 2.2e-09 66.2 43 65.1
QL02p055998 Quercus lobata HOM05D000010 ORTHO05D000151 2.2e-09 66.2 48 56.2
PGSC0003DMG400043393 Solanum tuberosum HOM05D000010 ORTHO05D000151 2.2e-09 66.2 47 61.7
Ciclev10017618m.g Citrus clementina HOM05D000010 ORTHO05D000151 2.9e-09 65.9 49 61.2
TAR623G0651 Trochodendron aralioides HOM05D000010 ORTHO05D000151 3.7e-09 65.5 54 53.7
QL02p054940 Quercus lobata HOM05D000010 ORTHO05D023096 4.9e-09 65.1 48 52.1
CiPaw.13G158900 Carya illinoinensis HOM05D000010 ORTHO05D000151 6.4e-09 64.7 50 60.0
QL02p054810 Quercus lobata HOM05D000010 ORTHO05D023096 6.4e-09 64.7 48 52.1
QL02p055895 Quercus lobata HOM05D000010 ORTHO05D023096 6.4e-09 64.7 48 52.1
Cc01_g04590 Coffea canephora HOM05D000010 ORTHO05D154272 1.1e-08 63.9 46 63.0
Gohir.A09G113356 Gossypium hirsutum HOM05D000010 ORTHO05D000151 1.4e-08 63.5 43 58.1
Gohir.D09G110100 Gossypium hirsutum HOM05D000010 ORTHO05D000151 1.4e-08 63.5 43 58.1
Gorai.006G127700 Gossypium raimondii HOM05D000010 ORTHO05D000151 1.4e-08 63.5 43 58.1
Sabra03G0070700 Salix brachista HOM05D000907 ORTHO05D000753 1.4e-08 63.5 45 57.8
Atru.chr7.550 Acer truncatum HOM05D000010 ORTHO05D000151 1.9e-08 63.2 43 60.5
MBI04_g17673_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000151 2.4e-08 62.8 54 50.0
QL02p055892 Quercus lobata HOM05D000010 ORTHO05D000151 4.1e-08 62.0 48 54.2
Sabra18G0081300 Salix brachista HOM05D000010 ORTHO05D050443 4.1e-08 62.0 55 50.9
GSVIVG01025244001 Vitis vinifera HOM05D000010 ORTHO05D000151 4.1e-08 62.0 44 59.1
Actinidia17322 Actinidia chinensis HOM05D000196 ORTHO05D000279 5.4e-08 61.6 48 58.3
GSVIVG01035959001 Vitis vinifera HOM05D000010 ORTHO05D000151 7.1e-08 61.2 48 52.1
CiPaw.13G149700 Carya illinoinensis HOM05D000010 ORTHO05D000151 1.2e-07 60.5 43 58.1
Prupe.1G088700 Prunus persica HOM05D000010 ORTHO05D000151 1.2e-07 60.5 44 63.6
Solyc10g083450.3 Solanum lycopersicum HOM05D000010 ORTHO05D000151 1.2e-07 60.5 43 62.8
Sopen10g032920 Solanum pennellii HOM05D000010 ORTHO05D000151 1.2e-07 60.5 43 62.8
Cfa009784 Carpinus fangiana HOM05D000010 ORTHO05D000151 1.6e-07 60.1 70 40.0
CiPaw.13G158800 Carya illinoinensis HOM05D000010 ORTHO05D000151 2.1e-07 59.7 43 58.1
Peaxi162Scf00432g00076 Petunia axillaris HOM05D000010 ORTHO05D000151 2.1e-07 59.7 55 49.1
FvH4_5g29430 Fragaria vesca HOM05D000010 ORTHO05D017933 2.7e-07 59.3 47 55.3
FAN04G2708 Fragaria x ananassa HOM05D000010 ORTHO05D017933 2.7e-07 59.3 47 55.3
FAN08G1667 Fragaria x ananassa HOM05D000010 ORTHO05D017933 2.7e-07 59.3 47 55.3
FAN13G1656 Fragaria x ananassa HOM05D000010 ORTHO05D017933 2.7e-07 59.3 47 55.3
FAN18G0981 Fragaria x ananassa HOM05D000010 ORTHO05D000151 2.7e-07 59.3 47 55.3
MD11G1190900 Malus domestica HOM05D000010 ORTHO05D000151 2.7e-07 59.3 43 58.1
Prupe.4G253600 Prunus persica HOM05D000010 ORTHO05D000151 2.7e-07 59.3 44 56.8
HanXRQChr13g0420641 Helianthus annuus HOM05D000010 ORTHO05D013310 4.6e-07 58.5 62 40.3
HanXRQChr13g0420651 Helianthus annuus HOM05D000010 ORTHO05D013310 4.6e-07 58.5 62 40.3
TAR636G3367 Trochodendron aralioides HOM05D000010 ORTHO05D416231 4.6e-07 58.5 46 58.7
HanXRQChr13g0420671 Helianthus annuus HOM05D000010 ORTHO05D013310 6.0e-07 58.2 62 40.3
Hma1.2p1_2159F.1_g315480 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2159F.1_g315490 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2159F.1_g315525 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2159F.1_g315530 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315946 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315950 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315953 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315956 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315959 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315960 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315962 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315963 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315964 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315965 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315966 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2170F.1_g315967 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2297F.1_g319164 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2297F.1_g319166 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2297F.1_g319168 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2923F.1_g330365 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2963F.1_g330940 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_2963F.1_g330945 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_3165F.1_g333533 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
Hma1.2p1_3165F.1_g333536 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 6.0e-07 58.2 57 45.6
RcHm_v2.0_Chr5g0052571 Rosa chinensis HOM05D000010 ORTHO05D017933 6.0e-07 58.2 43 58.1
Nitab4.5_0000570g0050 Nicotiana tabacum HOM05D000010 ORTHO05D000151 7.8e-07 57.8 41 63.4
CiPaw.05G195200 Carya illinoinensis HOM05D000010 ORTHO05D000151 1.0e-06 57.4 46 47.8
COL.COLO4_35915 Corchorus olitorius HOM05D000010 ORTHO05D158817 1.0e-06 57.4 50 52.0
HanXRQChr04g0120061 Helianthus annuus HOM05D000010 ORTHO05D013310 1.0e-06 57.4 59 42.4
Lj9A687G74 Lonicera japonica HOM05D000010 ORTHO05D235219 1.0e-06 57.4 42 54.8
FAN16G0659 Fragaria x ananassa HOM05D000010 ORTHO05D017933 1.3e-06 57.0 47 53.2
HanXRQChr01g0024001 Helianthus annuus HOM05D000010 ORTHO05D013310 1.3e-06 57.0 47 53.2
MD03G1172900 Malus domestica HOM05D000010 ORTHO05D000151 1.3e-06 57.0 43 55.8
Manes.14G003833 Manihot esculenta HOM05D000010 ORTHO05D000151 1.3e-06 57.0 43 51.2
QL01p004418 Quercus lobata HOM05D000010 ORTHO05D000151 1.3e-06 57.0 46 54.3
QL01p004518 Quercus lobata HOM05D000010 ORTHO05D000151 1.3e-06 57.0 46 54.3
Haze_18995 Corylus avellana HOM05D000010 ORTHO05D000063 1.7e-06 56.6 58 39.7
HanXRQChr01g0024011 Helianthus annuus HOM05D000010 ORTHO05D013310 1.7e-06 56.6 47 53.2
Potri.009G052200 Populus trichocarpa HOM05D000010 ORTHO05D000151 1.7e-06 56.6 44 50.0
Sabra16G0058200 Salix brachista HOM05D000010 ORTHO05D037412 1.7e-06 56.6 44 52.3
Sabra16G0058300 Salix brachista HOM05D000010 ORTHO05D037412 1.7e-06 56.6 44 52.3
QL01p004403 Quercus lobata HOM05D000010 ORTHO05D338255 2.3e-06 56.2 61 44.3
Rhsim04G0102300 Rhododendron simsii HOM05D000010 ORTHO05D050673 2.3e-06 56.2 57 49.1
Sabra09G0038100 Salix brachista HOM05D000010 ORTHO05D000151 2.3e-06 56.2 43 51.2
THA.LOC104811304 Tarenaya hassleriana HOM05D000010 ORTHO05D000151 2.3e-06 56.2 43 53.5
TWI34G1230 Tripterygium wilfordii HOM05D000010 ORTHO05D413817 2.3e-06 56.2 47 51.1
HanXRQChr13g0420661 Helianthus annuus HOM05D000010 ORTHO05D013310 3.0e-06 55.8 62 38.7
Potri.009G052300 Populus trichocarpa HOM05D000010 ORTHO05D000151 3.0e-06 55.8 43 51.2
RcHm_v2.0_Chr3g0481471 Rosa chinensis HOM05D000010 ORTHO05D000151 3.0e-06 55.8 45 48.9
Dinv42743 Davidia involucrata HOM05D000010 ORTHO05D000151 3.9e-06 55.5 54 42.6
Dinv43358 Davidia involucrata HOM05D000010 ORTHO05D000151 3.9e-06 55.5 54 42.6
Duzib106G0349 Durio zibethinus HOM05D000010 ORTHO05D000151 3.9e-06 55.5 57 40.4
ECA236G3382 Erigeron canadensis HOM05D000010 ORTHO05D010479 3.9e-06 55.5 44 54.5
Migut.J00990 Erythranthe guttata HOM05D000010 ORTHO05D000151 3.9e-06 55.5 46 58.7
Migut.J00992 Erythranthe guttata HOM05D000010 ORTHO05D000151 3.9e-06 55.5 46 58.7
Migut.N00806 Erythranthe guttata HOM05D000010 ORTHO05D000151 3.9e-06 55.5 47 53.2
Lalb_Chr03g0030541 Lupinus albus HOM05D000010 ORTHO05D000151 3.9e-06 55.5 56 46.4
RcHm_v2.0_Chr3g0471331 Rosa chinensis HOM05D000010 ORTHO05D022624 3.9e-06 55.5 42 54.8
TWI74G0443 Tripterygium wilfordii HOM05D000010 ORTHO05D000151 3.9e-06 55.5 65 38.5
Migut.N00787 Erythranthe guttata HOM05D000010 ORTHO05D000151 5.1e-06 55.1 47 53.2
Gohir.A10G223250 Gossypium hirsutum HOM05D000010 ORTHO05D000151 5.1e-06 55.1 57 42.1
Nitab4.5_0009499g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000151 5.1e-06 55.1 47 46.8
Oeu017947.1 Olea europaea HOM05D000010 ORTHO05D288011 5.1e-06 55.1 55 45.5
HanXRQChr04g0113811 Helianthus annuus HOM05D000010 ORTHO05D013310 6.6e-06 54.7 45 53.3
HanXRQChr09g0263921 Helianthus annuus HOM05D000010 ORTHO05D013310 6.6e-06 54.7 45 53.3
Thecc.05G156700 Theobroma cacao HOM05D000010 ORTHO05D000151 6.6e-06 54.7 38 63.2
TAR381G1605 Trochodendron aralioides HOM05D000010 ORTHO05D000063 6.6e-06 54.7 74 35.1
CSS0024133 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 8.6e-06 54.3 67 34.3
Ciclev10010524m.g Citrus clementina HOM05D000010 ORTHO05D000151 8.6e-06 54.3 46 52.2
Ciclev10010632m.g Citrus clementina HOM05D000010 ORTHO05D000151 8.6e-06 54.3 46 52.2
Migut.N00371 Erythranthe guttata HOM05D000010 ORTHO05D000151 8.6e-06 54.3 44 56.8
Hma1.2p1_1241F.1_g269700 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 8.6e-06 54.3 43 58.1
Hma1.2p1_1241F.1_g269705 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 8.6e-06 54.3 43 58.1
Hma1.2p1_1241F.1_g269720 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 8.6e-06 54.3 43 58.1
Hma1.2p1_1241F.1_g269725 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 8.6e-06 54.3 43 58.1
Sabra16G0156000 Salix brachista HOM05D000010 ORTHO05D050488 8.6e-06 54.3 43 46.5
SGA_v2.0_scaffold3G01500 Striga asiatica HOM05D001673 ORTHO05D012548 8.6e-06 54.3 50 46.0


User provided reference genes

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